Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC20.35■□□□□ 0.85
COL4A1P02462 EML3-217ENST00000531557 2509 ntTSL 5 BASIC20.35■□□□□ 0.85
COL4A1P02462 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC20.35■□□□□ 0.85
COL4A1P02462 REEP4-207ENST00000523293 913 ntTSL 3 BASIC20.35■□□□□ 0.85
COL4A1P02462 API5-211ENST00000534695 560 ntTSL 5 BASIC20.35■□□□□ 0.85
COL4A1P02462 ZNF710-AS1-201ENST00000558334 1168 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
COL4A1P02462 QPRT-203ENST00000562473 579 ntTSL 3 BASIC20.35■□□□□ 0.85
COL4A1P02462 ARL16-202ENST00000570561 768 ntTSL 2 BASIC20.35■□□□□ 0.85
COL4A1P02462 AC105021.1-202ENST00000570572 669 ntBASIC20.35■□□□□ 0.85
COL4A1P02462 AC061975.2-201ENST00000581722 295 ntBASIC20.35■□□□□ 0.85
COL4A1P02462 IGHV3-72-202ENST00000621503 303 ntBASIC20.35■□□□□ 0.85
COL4A1P02462 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC20.35■□□□□ 0.85
COL4A1P02462 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC20.35■□□□□ 0.85
COL4A1P02462 ZFP1-209ENST00000570010 1457 ntAPPRIS P1 TSL 2 BASIC20.34■□□□□ 0.85
COL4A1P02462 FAM49B-224ENST00000522941 1700 ntTSL 5 BASIC20.34■□□□□ 0.85
COL4A1P02462 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
COL4A1P02462 DUSP26-203ENST00000523956 1373 ntAPPRIS P1 TSL 5 BASIC20.34■□□□□ 0.85
COL4A1P02462 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC20.34■□□□□ 0.85
COL4A1P02462 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
COL4A1P02462 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
COL4A1P02462 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC20.34■□□□□ 0.85
COL4A1P02462 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC20.34■□□□□ 0.85
COL4A1P02462 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
COL4A1P02462 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
COL4A1P02462 MRPS22-212ENST00000495075 1547 ntAPPRIS P2 TSL 1 (best) BASIC20.34■□□□□ 0.85
COL4A1P02462 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
COL4A1P02462 TCEAL3-202ENST00000372627 1113 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
COL4A1P02462 DPM2-202ENST00000373110 738 ntTSL 2 BASIC20.34■□□□□ 0.85
COL4A1P02462 PSMB9-207ENST00000374859 782 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
COL4A1P02462 PSMB9-208ENST00000395330 792 ntTSL 3 BASIC20.34■□□□□ 0.85
COL4A1P02462 CBX7-202ENST00000401405 784 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
COL4A1P02462 ASXL1-206ENST00000542461 1068 ntTSL 5 BASIC20.34■□□□□ 0.85
COL4A1P02462 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC20.34■□□□□ 0.85
COL4A1P02462 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC20.34■□□□□ 0.85
COL4A1P02462 CHMP5-201ENST00000223500 1477 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
COL4A1P02462 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC20.34■□□□□ 0.85
COL4A1P02462 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
COL4A1P02462 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC20.34■□□□□ 0.85
COL4A1P02462 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC20.34■□□□□ 0.85
COL4A1P02462 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
COL4A1P02462 CLPTM1L-216ENST00000630539 2032 ntTSL 5 BASIC20.34■□□□□ 0.85
COL4A1P02462 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
COL4A1P02462 CD1B-201ENST00000368168 1395 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
COL4A1P02462 IL11RA-215ENST00000602473 1388 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
COL4A1P02462 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC20.33■□□□□ 0.85
COL4A1P02462 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
COL4A1P02462 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
COL4A1P02462 ZSCAN10-202ENST00000538082 2350 ntTSL 4 BASIC20.33■□□□□ 0.85
COL4A1P02462 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
COL4A1P02462 AARSD1-202ENST00000427569 1322 ntAPPRIS P1 TSL 5 BASIC20.33■□□□□ 0.85
COL4A1P02462 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC20.33■□□□□ 0.85
COL4A1P02462 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC20.33■□□□□ 0.85
COL4A1P02462 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.85
COL4A1P02462 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC20.33■□□□□ 0.85
COL4A1P02462 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.85
COL4A1P02462 LINC01660-203ENST00000618517 1859 ntTSL 2 BASIC20.33■□□□□ 0.85
COL4A1P02462 ZUFSP-201ENST00000368573 1225 ntTSL 5 BASIC20.33■□□□□ 0.85
COL4A1P02462 CUTA-202ENST00000374496 762 ntAPPRIS P3 TSL 5 BASIC20.33■□□□□ 0.85
COL4A1P02462 MFAP2-201ENST00000375534 970 ntAPPRIS P1 TSL 2 BASIC20.33■□□□□ 0.85
COL4A1P02462 AL079307.3-201ENST00000556114 283 ntBASIC20.33■□□□□ 0.85
COL4A1P02462 PCYT2-203ENST00000538936 5147 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
COL4A1P02462 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
COL4A1P02462 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC20.33■□□□□ 0.84
COL4A1P02462 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC20.33■□□□□ 0.84
COL4A1P02462 FADS1-216ENST00000542506 1725 ntTSL 2 BASIC20.33■□□□□ 0.84
COL4A1P02462 LETM2-201ENST00000297720 1693 ntTSL 2 BASIC20.33■□□□□ 0.84
COL4A1P02462 CETN4P-206ENST00000642099 2168 ntBASIC20.33■□□□□ 0.84
COL4A1P02462 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
COL4A1P02462 ACOT7-204ENST00000377855 1614 ntAPPRIS P4 TSL 1 (best) BASIC20.32■□□□□ 0.84
COL4A1P02462 NXT2-202ENST00000372103 1085 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
COL4A1P02462 LINC00229-201ENST00000443783 500 ntTSL 2 BASIC20.32■□□□□ 0.84
COL4A1P02462 AL512638.1-201ENST00000457493 794 ntBASIC20.32■□□□□ 0.84
COL4A1P02462 AC092910.3-202ENST00000469070 982 ntTSL 3 BASIC20.32■□□□□ 0.84
COL4A1P02462 SLC8B1-206ENST00000549069 1058 ntTSL 2 BASIC20.32■□□□□ 0.84
COL4A1P02462 NUBP2-208ENST00000565987 1049 ntTSL 5 BASIC20.32■□□□□ 0.84
COL4A1P02462 PRR29-204ENST00000577953 565 ntTSL 4 BASIC20.32■□□□□ 0.84
COL4A1P02462 SNHG15-207ENST00000582727 1039 ntTSL 2 BASIC20.32■□□□□ 0.84
COL4A1P02462 ALDH3B1-203ENST00000612297 1231 ntTSL 3 BASIC20.32■□□□□ 0.84
COL4A1P02462 TMEM64-203ENST00000458549 4997 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
COL4A1P02462 BORCS8-MEF2B-203ENST00000514819 1406 ntAPPRIS ALT2 TSL 5 BASIC20.32■□□□□ 0.84
COL4A1P02462 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
COL4A1P02462 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
COL4A1P02462 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
COL4A1P02462 DZANK1-202ENST00000329494 1389 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
COL4A1P02462 FBXO7-201ENST00000266087 2195 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
COL4A1P02462 GOLGA2P2Y-202ENST00000423852 1506 ntBASIC20.32■□□□□ 0.84
COL4A1P02462 MARCH2-208ENST00000602117 1667 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
COL4A1P02462 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC20.32■□□□□ 0.84
COL4A1P02462 PANK2-209ENST00000621507 1763 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
COL4A1P02462 ZSCAN2-203ENST00000334141 993 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
COL4A1P02462 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
COL4A1P02462 RBM39-205ENST00000397370 612 ntTSL 2 BASIC20.32■□□□□ 0.84
COL4A1P02462 AL136311.1-206ENST00000416069 899 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
COL4A1P02462 AL353705.2-201ENST00000428243 662 ntBASIC20.32■□□□□ 0.84
COL4A1P02462 DLX2-AS1-201ENST00000448117 950 ntTSL 5 BASIC20.32■□□□□ 0.84
COL4A1P02462 HHEX-203ENST00000492654 808 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
COL4A1P02462 TOMM5-205ENST00000544379 635 ntTSL 2 BASIC20.32■□□□□ 0.84
COL4A1P02462 IL32-234ENST00000552936 713 ntAPPRIS ALT2 TSL 3 BASIC20.32■□□□□ 0.84
COL4A1P02462 AC022167.4-201ENST00000570290 498 ntTSL 3 BASIC20.32■□□□□ 0.84
COL4A1P02462 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 40.2 ms