Protein–RNA interactions for Protein: O95197

RTN3, Reticulon-3, humanhuman

Predicted RBP Predictions only

Length 1,032 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3O95197 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
RTN3O95197 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
RTN3O95197 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
RTN3O95197 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.44
RTN3O95197 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
RTN3O95197 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC17.78■□□□□ 0.44
RTN3O95197 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
RTN3O95197 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
RTN3O95197 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC17.78■□□□□ 0.44
RTN3O95197 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC17.78■□□□□ 0.44
RTN3O95197 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
RTN3O95197 AC211486.1-202ENST00000416371 468 ntBASIC17.78■□□□□ 0.44
RTN3O95197 ACTG1P14-201ENST00000446382 1122 ntBASIC17.78■□□□□ 0.44
RTN3O95197 AC211476.1-201ENST00000503899 468 ntBASIC17.78■□□□□ 0.44
RTN3O95197 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC17.78■□□□□ 0.44
RTN3O95197 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC17.78■□□□□ 0.44
RTN3O95197 AC091167.2-201ENST00000579581 588 ntBASIC17.78■□□□□ 0.44
RTN3O95197 AC007192.2-201ENST00000600364 463 ntTSL 5 BASIC17.78■□□□□ 0.44
RTN3O95197 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
RTN3O95197 MCCC2-209ENST00000629193 1128 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
RTN3O95197 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
RTN3O95197 GTF2H1-203ENST00000453096 2707 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
RTN3O95197 ZNF286A-204ENST00000464847 5616 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
RTN3O95197 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
RTN3O95197 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
RTN3O95197 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
RTN3O95197 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
RTN3O95197 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
RTN3O95197 STX3-203ENST00000529177 1571 ntTSL 2 BASIC17.78■□□□□ 0.44
RTN3O95197 TSPYL5-201ENST00000322128 4491 ntAPPRIS P1 BASIC17.78■□□□□ 0.44
RTN3O95197 ARHGAP6-202ENST00000337414 5117 ntAPPRIS P4 TSL 1 (best) BASIC17.78■□□□□ 0.44
RTN3O95197 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
RTN3O95197 RPAIN-203ENST00000381209 1535 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
RTN3O95197 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC17.77■□□□□ 0.44
RTN3O95197 KLHL21-202ENST00000377663 6445 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
RTN3O95197 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
RTN3O95197 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
RTN3O95197 AC092850.2-201ENST00000623821 2697 ntBASIC17.77■□□□□ 0.44
RTN3O95197 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
RTN3O95197 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
RTN3O95197 REPS2-201ENST00000303843 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
RTN3O95197 FLJ38576-201ENST00000623820 2459 ntBASIC17.77■□□□□ 0.44
RTN3O95197 RTN3-205ENST00000356000 2645 ntTSL 2 BASIC17.77■□□□□ 0.44
RTN3O95197 AL023806.1-201ENST00000603994 1649 ntBASIC17.77■□□□□ 0.44
RTN3O95197 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.44
RTN3O95197 EVI5L-202ENST00000538904 2418 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
RTN3O95197 MTERF2-201ENST00000240050 1790 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
RTN3O95197 HARS-203ENST00000431330 1774 ntTSL 2 BASIC17.77■□□□□ 0.44
RTN3O95197 RHBDF1P1-201ENST00000427504 1941 ntBASIC17.77■□□□□ 0.44
RTN3O95197 CACNA1B-205ENST00000371363 9758 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.44
RTN3O95197 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC17.77■□□□□ 0.44
RTN3O95197 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.44
RTN3O95197 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
RTN3O95197 PARK7-203ENST00000377491 977 ntAPPRIS P1 TSL 3 BASIC17.77■□□□□ 0.44
RTN3O95197 HCG4-201ENST00000418983 998 ntBASIC17.77■□□□□ 0.44
RTN3O95197 FAM58CP-201ENST00000435741 640 ntBASIC17.77■□□□□ 0.44
RTN3O95197 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC17.77■□□□□ 0.44
RTN3O95197 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC17.77■□□□□ 0.44
RTN3O95197 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
RTN3O95197 DUX4L17-201ENST00000557360 1267 ntBASIC17.77■□□□□ 0.44
RTN3O95197 AC134684.3-201ENST00000641758 218 ntBASIC17.77■□□□□ 0.44
RTN3O95197 NKIRAS1-208ENST00000443659 2391 ntAPPRIS P2 TSL 5 BASIC17.77■□□□□ 0.44
RTN3O95197 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
RTN3O95197 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC17.77■□□□□ 0.44
RTN3O95197 FAM181B-201ENST00000329203 3924 ntAPPRIS P1 BASIC17.77■□□□□ 0.44
RTN3O95197 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
RTN3O95197 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC17.77■□□□□ 0.44
RTN3O95197 LZTS3-203ENST00000360342 4055 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
RTN3O95197 RNF169-201ENST00000299563 7823 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
RTN3O95197 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
RTN3O95197 FGD5-201ENST00000285046 5720 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
RTN3O95197 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
RTN3O95197 YY1AP1-210ENST00000368339 3073 ntAPPRIS ALT2 TSL 2 BASIC17.77■□□□□ 0.43
RTN3O95197 ASPM-201ENST00000294732 6132 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
RTN3O95197 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
RTN3O95197 AC012569.1-201ENST00000591191 1524 ntBASIC17.77■□□□□ 0.43
RTN3O95197 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.43
RTN3O95197 AD000864.1-201ENST00000624076 2295 ntBASIC17.77■□□□□ 0.43
RTN3O95197 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
RTN3O95197 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
RTN3O95197 PKD1P1-201ENST00000458669 6805 ntBASIC17.76■□□□□ 0.43
RTN3O95197 ELL2P1-201ENST00000413990 1906 ntBASIC17.76■□□□□ 0.43
RTN3O95197 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
RTN3O95197 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
RTN3O95197 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
RTN3O95197 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
RTN3O95197 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC17.76■□□□□ 0.43
RTN3O95197 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
RTN3O95197 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
RTN3O95197 DIAPH1-201ENST00000253811 5789 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
RTN3O95197 DIAPH1-202ENST00000389054 5795 ntAPPRIS P4 TSL 5 BASIC17.76■□□□□ 0.43
RTN3O95197 DIAPH1-204ENST00000398557 5789 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
RTN3O95197 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC17.76■□□□□ 0.43
RTN3O95197 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
RTN3O95197 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC17.76■□□□□ 0.43
RTN3O95197 KRT8P49-201ENST00000604166 1432 ntBASIC17.76■□□□□ 0.43
RTN3O95197 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC17.76■□□□□ 0.43
RTN3O95197 APCDD1L-AS1-201ENST00000420279 555 ntTSL 5 BASIC17.76■□□□□ 0.43
RTN3O95197 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC17.76■□□□□ 0.43
RTN3O95197 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC17.76■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 62 ms