Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 NTRK1-202ENST00000368196 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.25
VPS4BO75351 AL121758.1-201ENST00000488788 2714 ntAPPRIS P1 TSL 2 BASIC16.58■□□□□ 0.25
VPS4BO75351 VAV2-201ENST00000371850 4837 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
VPS4BO75351 ALKBH6-201ENST00000252984 955 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
VPS4BO75351 GGCT-205ENST00000409436 954 ntTSL 3 BASIC16.58■□□□□ 0.24
VPS4BO75351 AC021188.1-201ENST00000421534 740 ntTSL 3 BASIC16.58■□□□□ 0.24
VPS4BO75351 HNRNPA1P28-201ENST00000424481 961 ntBASIC16.58■□□□□ 0.24
VPS4BO75351 AC002116.1-201ENST00000473572 1130 ntTSL 2 BASIC16.58■□□□□ 0.24
VPS4BO75351 AC096582.2-201ENST00000510860 516 ntBASIC16.58■□□□□ 0.24
VPS4BO75351 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC16.58■□□□□ 0.24
VPS4BO75351 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC16.58■□□□□ 0.24
VPS4BO75351 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC16.58■□□□□ 0.24
VPS4BO75351 AC055811.1-201ENST00000584203 1231 ntTSL 5 BASIC16.58■□□□□ 0.24
VPS4BO75351 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC16.58■□□□□ 0.24
VPS4BO75351 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC16.58■□□□□ 0.24
VPS4BO75351 AL355385.1-201ENST00000606123 409 ntBASIC16.58■□□□□ 0.24
VPS4BO75351 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
VPS4BO75351 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC16.58■□□□□ 0.24
VPS4BO75351 AC008969.1-201ENST00000550135 6438 ntTSL 2 BASIC16.58■□□□□ 0.24
VPS4BO75351 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC16.58■□□□□ 0.24
VPS4BO75351 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC16.58■□□□□ 0.24
VPS4BO75351 PTK7-202ENST00000230419 4272 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.24
VPS4BO75351 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
VPS4BO75351 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC16.58■□□□□ 0.24
VPS4BO75351 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC16.58■□□□□ 0.24
VPS4BO75351 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC16.58■□□□□ 0.24
VPS4BO75351 MYO1D-201ENST00000318217 5563 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
VPS4BO75351 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC16.58■□□□□ 0.24
VPS4BO75351 NCAPH2-205ENST00000420993 2037 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.24
VPS4BO75351 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
VPS4BO75351 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
VPS4BO75351 LETM2-205ENST00000519476 2240 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
VPS4BO75351 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
VPS4BO75351 TBX4-201ENST00000240335 2470 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.24
VPS4BO75351 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
VPS4BO75351 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
VPS4BO75351 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
VPS4BO75351 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
VPS4BO75351 AC110813.1-201ENST00000507934 2209 ntTSL 2 BASIC16.57■□□□□ 0.24
VPS4BO75351 DOLPP1-202ENST00000372546 2177 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
VPS4BO75351 TUBGCP6-204ENST00000439308 6078 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
VPS4BO75351 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
VPS4BO75351 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC16.57■□□□□ 0.24
VPS4BO75351 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
VPS4BO75351 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
VPS4BO75351 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
VPS4BO75351 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC16.57■□□□□ 0.24
VPS4BO75351 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC16.57■□□□□ 0.24
VPS4BO75351 LAMTOR5-201ENST00000256644 868 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
VPS4BO75351 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
VPS4BO75351 RPL36-201ENST00000347512 707 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
VPS4BO75351 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC16.57■□□□□ 0.24
VPS4BO75351 CTNS-203ENST00000399306 803 ntTSL 3 BASIC16.57■□□□□ 0.24
VPS4BO75351 KLF4P1-201ENST00000412782 1185 ntBASIC16.57■□□□□ 0.24
VPS4BO75351 PMS2P2-201ENST00000425039 1128 ntBASIC16.57■□□□□ 0.24
VPS4BO75351 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC16.57■□□□□ 0.24
VPS4BO75351 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC16.57■□□□□ 0.24
VPS4BO75351 LAMTOR5-204ENST00000483260 694 ntTSL 2 BASIC16.57■□□□□ 0.24
VPS4BO75351 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
VPS4BO75351 LAMTOR5-206ENST00000602318 634 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
VPS4BO75351 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC16.57■□□□□ 0.24
VPS4BO75351 HOTTIP_1.1-201ENST00000620415 57 ntBASIC16.57■□□□□ 0.24
VPS4BO75351 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC16.57■□□□□ 0.24
VPS4BO75351 SYNC-202ENST00000409190 3398 ntAPPRIS P3 TSL 2 BASIC16.57■□□□□ 0.24
VPS4BO75351 PML-215ENST00000565898 5393 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
VPS4BO75351 MIDN-201ENST00000300952 3790 ntAPPRIS P2 TSL 5 BASIC16.57■□□□□ 0.24
VPS4BO75351 ASAP3-212ENST00000618240 2226 ntTSL 5 BASIC16.57■□□□□ 0.24
VPS4BO75351 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC16.57■□□□□ 0.24
VPS4BO75351 FRMPD4-201ENST00000380682 8465 ntAPPRIS P2 TSL 1 (best) BASIC16.57■□□□□ 0.24
VPS4BO75351 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC16.56■□□□□ 0.24
VPS4BO75351 KCNC1-202ENST00000379472 7965 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
VPS4BO75351 MFSD11-207ENST00000586622 2952 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
VPS4BO75351 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC16.56■□□□□ 0.24
VPS4BO75351 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
VPS4BO75351 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
VPS4BO75351 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.24
VPS4BO75351 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
VPS4BO75351 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC16.56■□□□□ 0.24
VPS4BO75351 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC16.56■□□□□ 0.24
VPS4BO75351 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
VPS4BO75351 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC16.56■□□□□ 0.24
VPS4BO75351 GPR158-AS1-201ENST00000449643 2433 ntTSL 2 BASIC16.56■□□□□ 0.24
VPS4BO75351 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
VPS4BO75351 IGSF8-202ENST00000368086 2366 ntAPPRIS P2 TSL 1 (best) BASIC16.56■□□□□ 0.24
VPS4BO75351 EIF4G3-212ENST00000602326 6196 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
VPS4BO75351 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC16.56■□□□□ 0.24
VPS4BO75351 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
VPS4BO75351 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
VPS4BO75351 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC16.56■□□□□ 0.24
VPS4BO75351 SPDYC-201ENST00000377185 991 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
VPS4BO75351 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
VPS4BO75351 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
VPS4BO75351 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC16.56■□□□□ 0.24
VPS4BO75351 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
VPS4BO75351 AC098831.1-202ENST00000438821 336 ntBASIC16.56■□□□□ 0.24
VPS4BO75351 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
VPS4BO75351 C11orf74-203ENST00000446510 1062 ntAPPRIS P3 TSL 5 BASIC16.56■□□□□ 0.24
VPS4BO75351 AC132008.2-207ENST00000454517 770 ntBASIC16.56■□□□□ 0.24
VPS4BO75351 RPS27L-204ENST00000455271 923 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
VPS4BO75351 SCARNA2-201ENST00000458748 420 ntBASIC16.56■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 60.9 ms