Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 HTR3E-201ENST00000335304 1912 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
SIX2Q9NPC8 NPC1L1-203ENST00000423141 2554 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
SIX2Q9NPC8 NOMO2-211ENST00000621364 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
SIX2Q9NPC8 CDK2-204ENST00000553376 1725 ntTSL 5 BASIC18.09■□□□□ 0.49
SIX2Q9NPC8 TAF1B-201ENST00000263663 2387 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
SIX2Q9NPC8 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
SIX2Q9NPC8 DNAAF2-202ENST00000406043 2819 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.49
SIX2Q9NPC8 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC18.08■□□□□ 0.49
SIX2Q9NPC8 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
SIX2Q9NPC8 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
SIX2Q9NPC8 WASF1-206ENST00000392588 3122 ntAPPRIS P1 TSL 5 BASIC18.08■□□□□ 0.49
SIX2Q9NPC8 ABTB1-201ENST00000232744 1965 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
SIX2Q9NPC8 NAP1L4-222ENST00000620138 2479 ntTSL 2 BASIC18.08■□□□□ 0.49
SIX2Q9NPC8 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC18.08■□□□□ 0.49
SIX2Q9NPC8 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
SIX2Q9NPC8 SRGAP2B-207ENST00000641863 2367 ntAPPRIS P5 BASIC18.08■□□□□ 0.48
SIX2Q9NPC8 ZMYM3-203ENST00000373981 1841 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
SIX2Q9NPC8 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.48
SIX2Q9NPC8 HYAL1-202ENST00000320295 2324 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.48
SIX2Q9NPC8 AC105760.2-201ENST00000418430 2341 ntTSL 2 BASIC18.08■□□□□ 0.48
SIX2Q9NPC8 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
SIX2Q9NPC8 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC18.08■□□□□ 0.48
SIX2Q9NPC8 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
SIX2Q9NPC8 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC18.08■□□□□ 0.48
SIX2Q9NPC8 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC18.08■□□□□ 0.48
SIX2Q9NPC8 AF186996.4-201ENST00000467186 377 ntBASIC18.08■□□□□ 0.48
SIX2Q9NPC8 RNA5SP419-201ENST00000515908 135 ntBASIC18.08■□□□□ 0.48
SIX2Q9NPC8 AP002469.2-201ENST00000531724 424 ntBASIC18.08■□□□□ 0.48
SIX2Q9NPC8 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC18.08■□□□□ 0.48
SIX2Q9NPC8 CALM3-211ENST00000598871 561 ntTSL 4 BASIC18.08■□□□□ 0.48
SIX2Q9NPC8 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.48
SIX2Q9NPC8 BSG-214ENST00000614867 960 ntTSL 3 BASIC18.08■□□□□ 0.48
SIX2Q9NPC8 AC117500.6-201ENST00000624871 588 ntBASIC18.08■□□□□ 0.48
SIX2Q9NPC8 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC18.08■□□□□ 0.48
SIX2Q9NPC8 PANK2-209ENST00000621507 1763 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
SIX2Q9NPC8 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC18.08■□□□□ 0.48
SIX2Q9NPC8 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
SIX2Q9NPC8 MCUR1-201ENST00000379170 5471 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
SIX2Q9NPC8 ADRA1A-204ENST00000380573 2548 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.48
SIX2Q9NPC8 RAB35-201ENST00000229340 2945 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
SIX2Q9NPC8 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.48
SIX2Q9NPC8 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
SIX2Q9NPC8 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC18.08■□□□□ 0.48
SIX2Q9NPC8 GAS7-213ENST00000580865 2417 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
SIX2Q9NPC8 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC18.08■□□□□ 0.48
SIX2Q9NPC8 LAD1-201ENST00000367313 2336 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
SIX2Q9NPC8 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
SIX2Q9NPC8 ELOVL7-205ENST00000508821 3994 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
SIX2Q9NPC8 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC18.07■□□□□ 0.48
SIX2Q9NPC8 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC18.07■□□□□ 0.48
SIX2Q9NPC8 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC18.07■□□□□ 0.48
SIX2Q9NPC8 GLOD4-203ENST00000536578 2497 ntTSL 5 BASIC18.07■□□□□ 0.48
SIX2Q9NPC8 AC129492.6-201ENST00000611383 1305 ntBASIC18.07■□□□□ 0.48
SIX2Q9NPC8 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC18.07■□□□□ 0.48
SIX2Q9NPC8 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC18.07■□□□□ 0.48
SIX2Q9NPC8 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC18.07■□□□□ 0.48
SIX2Q9NPC8 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
SIX2Q9NPC8 RGS11-202ENST00000316163 2376 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
SIX2Q9NPC8 IGSF8-202ENST00000368086 2366 ntAPPRIS P2 TSL 1 (best) BASIC18.07■□□□□ 0.48
SIX2Q9NPC8 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC18.07■□□□□ 0.48
SIX2Q9NPC8 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
SIX2Q9NPC8 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC18.07■□□□□ 0.48
SIX2Q9NPC8 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC18.07■□□□□ 0.48
SIX2Q9NPC8 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC18.07■□□□□ 0.48
SIX2Q9NPC8 AL450487.1-201ENST00000426799 995 ntBASIC18.07■□□□□ 0.48
SIX2Q9NPC8 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
SIX2Q9NPC8 AC108073.2-201ENST00000464002 357 ntBASIC18.07■□□□□ 0.48
SIX2Q9NPC8 PPIE-208ENST00000470213 927 ntTSL 3 BASIC18.07■□□□□ 0.48
SIX2Q9NPC8 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC18.07■□□□□ 0.48
SIX2Q9NPC8 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC18.07■□□□□ 0.48
SIX2Q9NPC8 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC18.07■□□□□ 0.48
SIX2Q9NPC8 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC18.07■□□□□ 0.48
SIX2Q9NPC8 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC18.07■□□□□ 0.48
SIX2Q9NPC8 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
SIX2Q9NPC8 BTN1A1-202ENST00000613186 2266 ntTSL 2 BASIC18.07■□□□□ 0.48
SIX2Q9NPC8 FBXL7-202ENST00000504595 4562 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
SIX2Q9NPC8 TLK2-201ENST00000326270 3512 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
SIX2Q9NPC8 TPD52L2-209ENST00000611972 2197 ntTSL 3 BASIC18.07■□□□□ 0.48
SIX2Q9NPC8 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC18.07■□□□□ 0.48
SIX2Q9NPC8 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
SIX2Q9NPC8 LINC00472-203ENST00000426635 2958 ntTSL 2 BASIC18.06■□□□□ 0.48
SIX2Q9NPC8 AC104809.1-201ENST00000425110 2345 ntTSL 2 BASIC18.06■□□□□ 0.48
SIX2Q9NPC8 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC18.06■□□□□ 0.48
SIX2Q9NPC8 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC18.06■□□□□ 0.48
SIX2Q9NPC8 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC18.06■□□□□ 0.48
SIX2Q9NPC8 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
SIX2Q9NPC8 GCK-209ENST00000616242 2260 ntTSL 5 BASIC18.06■□□□□ 0.48
SIX2Q9NPC8 GUCA1A-203ENST00000394237 2233 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.48
SIX2Q9NPC8 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
SIX2Q9NPC8 FADS3-207ENST00000527697 1640 ntTSL 5 BASIC18.06■□□□□ 0.48
SIX2Q9NPC8 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.48
SIX2Q9NPC8 CEP72-201ENST00000264935 2434 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
SIX2Q9NPC8 FOXP1-218ENST00000498215 2400 ntAPPRIS P3 TSL 2 BASIC18.06■□□□□ 0.48
SIX2Q9NPC8 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
SIX2Q9NPC8 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
SIX2Q9NPC8 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC18.06■□□□□ 0.48
SIX2Q9NPC8 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC18.06■□□□□ 0.48
SIX2Q9NPC8 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC18.06■□□□□ 0.48
SIX2Q9NPC8 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
SIX2Q9NPC8 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 62.7 ms