Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 STK39-201ENST00000355999 3820 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
VMP1Q96GC9 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
VMP1Q96GC9 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC16.26■□□□□ 0.19
VMP1Q96GC9 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC16.26■□□□□ 0.19
VMP1Q96GC9 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
VMP1Q96GC9 AL031284.1-201ENST00000419297 478 ntBASIC16.26■□□□□ 0.19
VMP1Q96GC9 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC16.26■□□□□ 0.19
VMP1Q96GC9 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC16.26■□□□□ 0.19
VMP1Q96GC9 PRYP5-201ENST00000451909 266 ntBASIC16.26■□□□□ 0.19
VMP1Q96GC9 SIGLEC30P-201ENST00000455569 941 ntBASIC16.26■□□□□ 0.19
VMP1Q96GC9 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
VMP1Q96GC9 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC16.26■□□□□ 0.19
VMP1Q96GC9 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
VMP1Q96GC9 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC16.26■□□□□ 0.19
VMP1Q96GC9 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC16.26■□□□□ 0.19
VMP1Q96GC9 PNMT-203ENST00000581428 677 ntTSL 2 BASIC16.26■□□□□ 0.19
VMP1Q96GC9 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC16.26■□□□□ 0.19
VMP1Q96GC9 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
VMP1Q96GC9 SCN5A-214ENST00000612060 714 ntTSL 5 BASIC16.26■□□□□ 0.19
VMP1Q96GC9 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
VMP1Q96GC9 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC16.26■□□□□ 0.19
VMP1Q96GC9 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC16.26■□□□□ 0.19
VMP1Q96GC9 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
VMP1Q96GC9 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
VMP1Q96GC9 SP2-201ENST00000376741 3112 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
VMP1Q96GC9 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
VMP1Q96GC9 FOXP1-218ENST00000498215 2400 ntAPPRIS P3 TSL 2 BASIC16.26■□□□□ 0.19
VMP1Q96GC9 AGPS-201ENST00000264167 7764 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
VMP1Q96GC9 NSFL1C-201ENST00000216879 3568 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
VMP1Q96GC9 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC16.26■□□□□ 0.19
VMP1Q96GC9 PRAG1-201ENST00000615670 4903 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
VMP1Q96GC9 CTDP1-201ENST00000075430 3538 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
VMP1Q96GC9 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC16.25■□□□□ 0.19
VMP1Q96GC9 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
VMP1Q96GC9 LSM12-204ENST00000591247 2484 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
VMP1Q96GC9 TAF1D-203ENST00000448108 2082 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
VMP1Q96GC9 MAP3K11-201ENST00000309100 3566 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
VMP1Q96GC9 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
VMP1Q96GC9 CCNA2-202ENST00000618014 2797 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
VMP1Q96GC9 CNP-201ENST00000393888 2583 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
VMP1Q96GC9 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC16.25■□□□□ 0.19
VMP1Q96GC9 EVC2-202ENST00000344408 4390 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
VMP1Q96GC9 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC16.25■□□□□ 0.19
VMP1Q96GC9 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
VMP1Q96GC9 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
VMP1Q96GC9 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
VMP1Q96GC9 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC16.25■□□□□ 0.19
VMP1Q96GC9 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC16.25■□□□□ 0.19
VMP1Q96GC9 MOGAT1-201ENST00000446656 1048 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
VMP1Q96GC9 AC093909.1-201ENST00000504731 1122 ntBASIC16.25■□□□□ 0.19
VMP1Q96GC9 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC16.25■□□□□ 0.19
VMP1Q96GC9 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC16.25■□□□□ 0.19
VMP1Q96GC9 RNF151-202ENST00000569210 853 ntTSL 2 BASIC16.25■□□□□ 0.19
VMP1Q96GC9 GLS2-217ENST00000623608 2518 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
VMP1Q96GC9 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC16.25■□□□□ 0.19
VMP1Q96GC9 GAS7-203ENST00000432992 4970 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
VMP1Q96GC9 TDRD6-203ENST00000544460 8887 ntAPPRIS ALT2 TSL 2 BASIC16.25■□□□□ 0.19
VMP1Q96GC9 SLC30A1-201ENST00000367001 5474 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
VMP1Q96GC9 ADAMTS13-206ENST00000371929 4934 ntAPPRIS P4 TSL 1 (best) BASIC16.25■□□□□ 0.19
VMP1Q96GC9 FADS2-201ENST00000257261 2964 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
VMP1Q96GC9 DENND3-201ENST00000262585 5438 ntAPPRIS P2 TSL 5 BASIC16.25■□□□□ 0.19
VMP1Q96GC9 PDK1-203ENST00000410055 2990 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
VMP1Q96GC9 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC16.25■□□□□ 0.19
VMP1Q96GC9 AC009336.1-201ENST00000608941 1553 ntBASIC16.25■□□□□ 0.19
VMP1Q96GC9 GNAQ-201ENST00000286548 6539 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
VMP1Q96GC9 NUTM2F-201ENST00000253262 2561 ntAPPRIS P2 TSL 1 (best) BASIC16.25■□□□□ 0.19
VMP1Q96GC9 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC16.25■□□□□ 0.19
VMP1Q96GC9 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
VMP1Q96GC9 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC16.25■□□□□ 0.19
VMP1Q96GC9 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
VMP1Q96GC9 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC16.24■□□□□ 0.19
VMP1Q96GC9 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC16.24■□□□□ 0.19
VMP1Q96GC9 PSMA1-209ENST00000530457 1527 ntTSL 5 BASIC16.24■□□□□ 0.19
VMP1Q96GC9 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC16.24■□□□□ 0.19
VMP1Q96GC9 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC16.24■□□□□ 0.19
VMP1Q96GC9 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC16.24■□□□□ 0.19
VMP1Q96GC9 STC2-201ENST00000265087 5353 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
VMP1Q96GC9 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
VMP1Q96GC9 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC16.24■□□□□ 0.19
VMP1Q96GC9 CTPS2-201ENST00000359276 3629 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
VMP1Q96GC9 ARAP2-201ENST00000303965 7514 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
VMP1Q96GC9 CARNS1-201ENST00000307823 3942 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
VMP1Q96GC9 SLC25A45-208ENST00000527174 2138 ntAPPRIS P1 TSL 3 BASIC16.24■□□□□ 0.19
VMP1Q96GC9 BACE2-203ENST00000347667 8764 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
VMP1Q96GC9 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC16.24■□□□□ 0.19
VMP1Q96GC9 RAI2-206ENST00000545871 2421 ntAPPRIS P1 TSL 4 BASIC16.24■□□□□ 0.19
VMP1Q96GC9 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
VMP1Q96GC9 MAPK7-201ENST00000299612 2715 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
VMP1Q96GC9 ADAMTS18-201ENST00000282849 5913 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
VMP1Q96GC9 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
VMP1Q96GC9 HINT1-201ENST00000304043 1081 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
VMP1Q96GC9 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
VMP1Q96GC9 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC16.24■□□□□ 0.19
VMP1Q96GC9 RPS2P1-201ENST00000434010 821 ntBASIC16.24■□□□□ 0.19
VMP1Q96GC9 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC16.24■□□□□ 0.19
VMP1Q96GC9 OR7E14P-202ENST00000530490 1290 ntBASIC16.24■□□□□ 0.19
VMP1Q96GC9 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC16.24■□□□□ 0.19
VMP1Q96GC9 PAM16-208ENST00000573553 722 ntTSL 2 BASIC16.24■□□□□ 0.19
VMP1Q96GC9 AC025062.2-201ENST00000605477 670 ntBASIC16.24■□□□□ 0.19
VMP1Q96GC9 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC16.24■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 72.7 ms