Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC16.85■□□□□ 0.29
TTC28Q96AY4 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
TTC28Q96AY4 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
TTC28Q96AY4 MARCH2-208ENST00000602117 1667 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
TTC28Q96AY4 MRPL55-206ENST00000366732 722 ntTSL 3 BASIC16.85■□□□□ 0.29
TTC28Q96AY4 IGLJ3-201ENST00000390324 176 ntAPPRIS P1 BASIC16.85■□□□□ 0.29
TTC28Q96AY4 SPDYE17-201ENST00000412399 783 ntBASIC16.85■□□□□ 0.29
TTC28Q96AY4 ACTG1P3-201ENST00000431775 1114 ntBASIC16.85■□□□□ 0.29
TTC28Q96AY4 AL669831.5-201ENST00000434264 844 ntTSL 5 BASIC16.85■□□□□ 0.29
TTC28Q96AY4 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC16.85■□□□□ 0.29
TTC28Q96AY4 TMEM5-AS1-201ENST00000546214 563 ntTSL 4 BASIC16.85■□□□□ 0.29
TTC28Q96AY4 AC087612.1-201ENST00000560238 658 ntTSL 5 BASIC16.85■□□□□ 0.29
TTC28Q96AY4 AC120498.1-201ENST00000563593 476 ntTSL 4 BASIC16.85■□□□□ 0.29
TTC28Q96AY4 AC138207.8-201ENST00000579692 739 ntTSL 3 BASIC16.85■□□□□ 0.29
TTC28Q96AY4 HIST1H2BO-201ENST00000616182 381 ntAPPRIS P1 BASIC16.85■□□□□ 0.29
TTC28Q96AY4 AC091812.3-201ENST00000621362 345 ntBASIC16.85■□□□□ 0.29
TTC28Q96AY4 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
TTC28Q96AY4 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
TTC28Q96AY4 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
TTC28Q96AY4 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
TTC28Q96AY4 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC16.84■□□□□ 0.29
TTC28Q96AY4 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC16.84■□□□□ 0.29
TTC28Q96AY4 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
TTC28Q96AY4 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC16.84■□□□□ 0.29
TTC28Q96AY4 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
TTC28Q96AY4 SMARCE1-204ENST00000400122 1263 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
TTC28Q96AY4 SERF2-206ENST00000409291 807 ntTSL 3 BASIC16.84■□□□□ 0.29
TTC28Q96AY4 CHIA-209ENST00000483391 1188 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
TTC28Q96AY4 SMARCE1-213ENST00000578044 1184 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
TTC28Q96AY4 SMARCE1-216ENST00000580419 1228 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
TTC28Q96AY4 ZNF83-215ENST00000600714 810 ntTSL 3 BASIC16.84■□□□□ 0.29
TTC28Q96AY4 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
TTC28Q96AY4 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
TTC28Q96AY4 DMAC2-201ENST00000221943 1692 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
TTC28Q96AY4 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC16.84■□□□□ 0.29
TTC28Q96AY4 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC16.84■□□□□ 0.29
TTC28Q96AY4 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC16.84■□□□□ 0.29
TTC28Q96AY4 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC16.84■□□□□ 0.29
TTC28Q96AY4 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
TTC28Q96AY4 C8orf74-201ENST00000304519 1036 ntAPPRIS P2 TSL 1 (best) BASIC16.84■□□□□ 0.29
TTC28Q96AY4 RPP40-201ENST00000319533 1088 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
TTC28Q96AY4 SNX21-203ENST00000372541 771 ntTSL 2 BASIC16.84■□□□□ 0.29
TTC28Q96AY4 MASP2-202ENST00000400898 726 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
TTC28Q96AY4 LARGE-AS1-202ENST00000424291 1065 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
TTC28Q96AY4 AL355864.2-201ENST00000447420 863 ntBASIC16.84■□□□□ 0.29
TTC28Q96AY4 AP006547.1-201ENST00000563435 692 ntBASIC16.84■□□□□ 0.29
TTC28Q96AY4 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
TTC28Q96AY4 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC16.83■□□□□ 0.29
TTC28Q96AY4 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC16.83■□□□□ 0.29
TTC28Q96AY4 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC16.83■□□□□ 0.29
TTC28Q96AY4 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC16.83■□□□□ 0.29
TTC28Q96AY4 CLCNKB-204ENST00000619181 1544 ntTSL 5 BASIC16.83■□□□□ 0.29
TTC28Q96AY4 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
TTC28Q96AY4 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
TTC28Q96AY4 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
TTC28Q96AY4 SYCN-201ENST00000318438 573 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
TTC28Q96AY4 AC073133.1-201ENST00000426187 432 ntTSL 3 BASIC16.83■□□□□ 0.28
TTC28Q96AY4 MEF2C-AS2-201ENST00000510274 463 ntTSL 5 BASIC16.83■□□□□ 0.28
TTC28Q96AY4 AC104241.2-201ENST00000532748 789 ntTSL 3 BASIC16.83■□□□□ 0.28
TTC28Q96AY4 AC092811.2-201ENST00000632561 559 ntTSL 4 BASIC16.83■□□□□ 0.28
TTC28Q96AY4 RHOXF1P1-202ENST00000635473 501 ntBASIC16.83■□□□□ 0.28
TTC28Q96AY4 CBX3-203ENST00000409747 1717 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
TTC28Q96AY4 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
TTC28Q96AY4 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC16.83■□□□□ 0.28
TTC28Q96AY4 ABTB1-201ENST00000232744 1965 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
TTC28Q96AY4 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
TTC28Q96AY4 PSMC3-201ENST00000298852 1544 ntAPPRIS P2 TSL 1 (best) BASIC16.83■□□□□ 0.28
TTC28Q96AY4 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
TTC28Q96AY4 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.28
TTC28Q96AY4 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
TTC28Q96AY4 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC16.83■□□□□ 0.28
TTC28Q96AY4 EFNA4-201ENST00000359751 1096 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
TTC28Q96AY4 RAD18-204ENST00000418463 563 ntTSL 4 BASIC16.82■□□□□ 0.28
TTC28Q96AY4 RAD18-205ENST00000421052 582 ntTSL 3 BASIC16.82■□□□□ 0.28
TTC28Q96AY4 PENK-202ENST00000451791 1029 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
TTC28Q96AY4 PGRMC2-206ENST00000512483 1144 ntTSL 5 BASIC16.82■□□□□ 0.28
TTC28Q96AY4 AC104596.2-201ENST00000512793 793 ntBASIC16.82■□□□□ 0.28
TTC28Q96AY4 HBS1L-208ENST00000525067 582 ntTSL 3 BASIC16.82■□□□□ 0.28
TTC28Q96AY4 TNNT1-203ENST00000536926 901 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
TTC28Q96AY4 AC008011.2-201ENST00000538113 792 ntTSL 3 BASIC16.82■□□□□ 0.28
TTC28Q96AY4 AC131009.1-201ENST00000539078 426 ntTSL 5 BASIC16.82■□□□□ 0.28
TTC28Q96AY4 AC079336.7-201ENST00000623428 1078 ntBASIC16.82■□□□□ 0.28
TTC28Q96AY4 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
TTC28Q96AY4 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC16.82■□□□□ 0.28
TTC28Q96AY4 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
TTC28Q96AY4 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC16.82■□□□□ 0.28
TTC28Q96AY4 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC16.82■□□□□ 0.28
TTC28Q96AY4 NCALD-217ENST00000521599 2289 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
TTC28Q96AY4 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
TTC28Q96AY4 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC16.82■□□□□ 0.28
TTC28Q96AY4 AC131009.4-201ENST00000624048 1740 ntBASIC16.82■□□□□ 0.28
TTC28Q96AY4 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC16.82■□□□□ 0.28
TTC28Q96AY4 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
TTC28Q96AY4 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
TTC28Q96AY4 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC16.82■□□□□ 0.28
TTC28Q96AY4 IL27-201ENST00000356897 1044 ntAPPRIS P2 TSL 1 (best) BASIC16.82■□□□□ 0.28
TTC28Q96AY4 MGST3-203ENST00000367885 680 ntTSL 2 BASIC16.82■□□□□ 0.28
TTC28Q96AY4 AC007388.1-210ENST00000415640 458 ntTSL 3 BASIC16.82■□□□□ 0.28
TTC28Q96AY4 IGHV3OR16-9-202ENST00000558425 288 ntAPPRIS ALT2 BASIC16.82■□□□□ 0.28
TTC28Q96AY4 CCDC144NL-AS1-209ENST00000577860 884 ntTSL 5 BASIC16.82■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 45.9 ms