Protein–RNA interactions for Protein: Q8N8U3

RTL3, Retrotransposon Gag-like protein 3, humanhuman

Known RBP Predictions only

Length 475 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTL3Q8N8U3 PC-204ENST00000524491 1714 ntTSL 2 BASIC17.3■□□□□ 0.36
RTL3Q8N8U3 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC17.3■□□□□ 0.36
RTL3Q8N8U3 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
RTL3Q8N8U3 BLOC1S5-202ENST00000397457 2684 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
RTL3Q8N8U3 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
RTL3Q8N8U3 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
RTL3Q8N8U3 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
RTL3Q8N8U3 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC17.3■□□□□ 0.36
RTL3Q8N8U3 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
RTL3Q8N8U3 HNRNPA1P28-201ENST00000424481 961 ntBASIC17.3■□□□□ 0.36
RTL3Q8N8U3 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC17.3■□□□□ 0.36
RTL3Q8N8U3 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC17.3■□□□□ 0.36
RTL3Q8N8U3 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC17.3■□□□□ 0.36
RTL3Q8N8U3 AC087641.1-201ENST00000557561 1021 ntBASIC17.3■□□□□ 0.36
RTL3Q8N8U3 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC17.3■□□□□ 0.36
RTL3Q8N8U3 MIR4515-201ENST00000584082 81 ntBASIC17.3■□□□□ 0.36
RTL3Q8N8U3 AC023141.13-201ENST00000604991 943 ntBASIC17.3■□□□□ 0.36
RTL3Q8N8U3 AQP6-205ENST00000618286 829 ntTSL 5 BASIC17.3■□□□□ 0.36
RTL3Q8N8U3 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
RTL3Q8N8U3 CEBPG-201ENST00000284000 4109 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
RTL3Q8N8U3 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC17.3■□□□□ 0.36
RTL3Q8N8U3 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
RTL3Q8N8U3 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
RTL3Q8N8U3 NETO2-202ENST00000562435 7481 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
RTL3Q8N8U3 LSM12-204ENST00000591247 2484 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
RTL3Q8N8U3 EDC3-202ENST00000426797 2093 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
RTL3Q8N8U3 HARS-203ENST00000431330 1774 ntTSL 2 BASIC17.3■□□□□ 0.36
RTL3Q8N8U3 RRAGD-202ENST00000369415 4900 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
RTL3Q8N8U3 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
RTL3Q8N8U3 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
RTL3Q8N8U3 MAGEA4-206ENST00000393921 1727 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
RTL3Q8N8U3 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
RTL3Q8N8U3 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC17.29■□□□□ 0.36
RTL3Q8N8U3 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
RTL3Q8N8U3 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
RTL3Q8N8U3 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
RTL3Q8N8U3 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
RTL3Q8N8U3 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC17.29■□□□□ 0.36
RTL3Q8N8U3 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
RTL3Q8N8U3 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
RTL3Q8N8U3 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
RTL3Q8N8U3 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC17.29■□□□□ 0.36
RTL3Q8N8U3 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC17.29■□□□□ 0.36
RTL3Q8N8U3 MAL2-202ENST00000531508 892 ntTSL 3 BASIC17.29■□□□□ 0.36
RTL3Q8N8U3 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC17.29■□□□□ 0.36
RTL3Q8N8U3 CYP2A7P1-201ENST00000595391 815 ntBASIC17.29■□□□□ 0.36
RTL3Q8N8U3 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC17.29■□□□□ 0.36
RTL3Q8N8U3 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC17.29■□□□□ 0.36
RTL3Q8N8U3 AP001350.2-201ENST00000625104 1094 ntBASIC17.29■□□□□ 0.36
RTL3Q8N8U3 AC007064.4-201ENST00000637740 555 ntBASIC17.29■□□□□ 0.36
RTL3Q8N8U3 AL645728.2-201ENST00000641974 660 ntBASIC17.29■□□□□ 0.36
RTL3Q8N8U3 AC012569.1-201ENST00000591191 1524 ntBASIC17.29■□□□□ 0.36
RTL3Q8N8U3 ADRA1A-202ENST00000354550 1765 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
RTL3Q8N8U3 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC17.29■□□□□ 0.36
RTL3Q8N8U3 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
RTL3Q8N8U3 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC17.29■□□□□ 0.36
RTL3Q8N8U3 PON2-201ENST00000222572 1745 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
RTL3Q8N8U3 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
RTL3Q8N8U3 FAM135A-209ENST00000505769 4806 ntTSL 5 BASIC17.29■□□□□ 0.36
RTL3Q8N8U3 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC17.29■□□□□ 0.36
RTL3Q8N8U3 KCNT1-202ENST00000371757 4717 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
RTL3Q8N8U3 C5orf30-201ENST00000319933 3049 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
RTL3Q8N8U3 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
RTL3Q8N8U3 PTCH1-201ENST00000331920 8057 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
RTL3Q8N8U3 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
RTL3Q8N8U3 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC17.28■□□□□ 0.36
RTL3Q8N8U3 LINC01168-201ENST00000461291 5254 ntTSL 2 BASIC17.28■□□□□ 0.36
RTL3Q8N8U3 RAB22A-201ENST00000244040 8670 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
RTL3Q8N8U3 DAPK1-207ENST00000469640 5899 ntTSL 5 BASIC17.28■□□□□ 0.36
RTL3Q8N8U3 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
RTL3Q8N8U3 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
RTL3Q8N8U3 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
RTL3Q8N8U3 MREG-205ENST00000620139 2618 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
RTL3Q8N8U3 ADGRB2-202ENST00000373658 5414 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
RTL3Q8N8U3 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
RTL3Q8N8U3 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
RTL3Q8N8U3 HIBCH-201ENST00000359678 1939 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
RTL3Q8N8U3 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC17.28■□□□□ 0.36
RTL3Q8N8U3 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC17.28■□□□□ 0.36
RTL3Q8N8U3 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
RTL3Q8N8U3 MIR940-201ENST00000401276 94 ntBASIC17.28■□□□□ 0.36
RTL3Q8N8U3 DDT-204ENST00000404092 805 ntTSL 3 BASIC17.28■□□□□ 0.36
RTL3Q8N8U3 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
RTL3Q8N8U3 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
RTL3Q8N8U3 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC17.28■□□□□ 0.36
RTL3Q8N8U3 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC17.28■□□□□ 0.36
RTL3Q8N8U3 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC17.28■□□□□ 0.36
RTL3Q8N8U3 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
RTL3Q8N8U3 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC17.28■□□□□ 0.36
RTL3Q8N8U3 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
RTL3Q8N8U3 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC17.28■□□□□ 0.36
RTL3Q8N8U3 AC004877.2-201ENST00000623941 599 ntBASIC17.28■□□□□ 0.36
RTL3Q8N8U3 ASAH1-231ENST00000636577 2129 ntTSL 5 BASIC17.28■□□□□ 0.36
RTL3Q8N8U3 AL139011.1-202ENST00000642063 584 ntBASIC17.28■□□□□ 0.36
RTL3Q8N8U3 FAM208A-209ENST00000493960 5600 ntAPPRIS P2 TSL 5 BASIC17.28■□□□□ 0.36
RTL3Q8N8U3 TAOK2-202ENST00000308893 5169 ntAPPRIS P4 TSL 1 (best) BASIC17.28■□□□□ 0.36
RTL3Q8N8U3 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC17.28■□□□□ 0.36
RTL3Q8N8U3 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
RTL3Q8N8U3 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
RTL3Q8N8U3 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 89.2 ms