Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 AL021920.2-201ENST00000624828 1351 ntBASIC16.91■□□□□ 0.3
HDDC3Q8N4P3 CROCCP2-202ENST00000412962 2773 ntBASIC16.91■□□□□ 0.3
HDDC3Q8N4P3 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC16.91■□□□□ 0.3
HDDC3Q8N4P3 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
HDDC3Q8N4P3 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
HDDC3Q8N4P3 LINC01168-201ENST00000461291 5254 ntTSL 2 BASIC16.91■□□□□ 0.3
HDDC3Q8N4P3 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
HDDC3Q8N4P3 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
HDDC3Q8N4P3 ZSWIM8-223ENST00000605216 6004 ntAPPRIS P2 TSL 1 (best) BASIC16.91■□□□□ 0.3
HDDC3Q8N4P3 HNRNPA1P40-201ENST00000426371 1278 ntBASIC16.91■□□□□ 0.3
HDDC3Q8N4P3 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC16.91■□□□□ 0.3
HDDC3Q8N4P3 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC16.91■□□□□ 0.3
HDDC3Q8N4P3 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
HDDC3Q8N4P3 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC16.91■□□□□ 0.3
HDDC3Q8N4P3 RN7SL589P-201ENST00000481268 310 ntBASIC16.91■□□□□ 0.3
HDDC3Q8N4P3 VPS29-207ENST00000549970 818 ntTSL 3 BASIC16.91■□□□□ 0.3
HDDC3Q8N4P3 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC16.91■□□□□ 0.3
HDDC3Q8N4P3 DUX4L27-201ENST00000554796 1261 ntBASIC16.91■□□□□ 0.3
HDDC3Q8N4P3 AC087641.1-201ENST00000557561 1021 ntBASIC16.91■□□□□ 0.3
HDDC3Q8N4P3 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC16.91■□□□□ 0.3
HDDC3Q8N4P3 AC005759.1-201ENST00000594805 855 ntTSL 3 BASIC16.91■□□□□ 0.3
HDDC3Q8N4P3 HDDC2-203ENST00000608284 538 ntTSL 3 BASIC16.91■□□□□ 0.3
HDDC3Q8N4P3 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC16.91■□□□□ 0.3
HDDC3Q8N4P3 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
HDDC3Q8N4P3 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
HDDC3Q8N4P3 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC16.91■□□□□ 0.3
HDDC3Q8N4P3 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC16.91■□□□□ 0.3
HDDC3Q8N4P3 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
HDDC3Q8N4P3 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC16.91■□□□□ 0.3
HDDC3Q8N4P3 TBC1D4-202ENST00000377636 6364 ntAPPRIS P3 TSL 2 BASIC16.91■□□□□ 0.3
HDDC3Q8N4P3 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC16.91■□□□□ 0.3
HDDC3Q8N4P3 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
HDDC3Q8N4P3 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC16.91■□□□□ 0.3
HDDC3Q8N4P3 ZDHHC11-209ENST00000511539 1303 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
HDDC3Q8N4P3 ZDHHC11B-204ENST00000622126 1301 ntTSL 5 BASIC16.91■□□□□ 0.3
HDDC3Q8N4P3 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
HDDC3Q8N4P3 AC067852.2-201ENST00000590513 2313 ntBASIC16.91■□□□□ 0.3
HDDC3Q8N4P3 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
HDDC3Q8N4P3 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC16.91■□□□□ 0.3
HDDC3Q8N4P3 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
HDDC3Q8N4P3 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
HDDC3Q8N4P3 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC16.91■□□□□ 0.3
HDDC3Q8N4P3 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
HDDC3Q8N4P3 GOSR1-201ENST00000225724 6039 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
HDDC3Q8N4P3 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC16.9■□□□□ 0.3
HDDC3Q8N4P3 DAG1-201ENST00000308775 5522 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
HDDC3Q8N4P3 SBNO2-202ENST00000438103 4537 ntAPPRIS ALT2 TSL 2 BASIC16.9■□□□□ 0.3
HDDC3Q8N4P3 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
HDDC3Q8N4P3 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC16.9■□□□□ 0.3
HDDC3Q8N4P3 AC005833.1-201ENST00000280684 4237 ntAPPRIS P1 BASIC16.9■□□□□ 0.3
HDDC3Q8N4P3 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
HDDC3Q8N4P3 HARS-204ENST00000438307 1789 ntTSL 2 BASIC16.9■□□□□ 0.3
HDDC3Q8N4P3 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
HDDC3Q8N4P3 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC16.9■□□□□ 0.3
HDDC3Q8N4P3 OSTC-201ENST00000361564 1077 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
HDDC3Q8N4P3 SNCA-205ENST00000394991 1290 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
HDDC3Q8N4P3 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC16.9■□□□□ 0.3
HDDC3Q8N4P3 AC015922.1-201ENST00000421102 1152 ntBASIC16.9■□□□□ 0.3
HDDC3Q8N4P3 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC16.9■□□□□ 0.3
HDDC3Q8N4P3 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC16.9■□□□□ 0.3
HDDC3Q8N4P3 AC019103.1-201ENST00000503095 272 ntTSL 3 BASIC16.9■□□□□ 0.3
HDDC3Q8N4P3 MTRF1LP2-201ENST00000506027 1122 ntBASIC16.9■□□□□ 0.3
HDDC3Q8N4P3 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC16.9■□□□□ 0.3
HDDC3Q8N4P3 AC103736.1-203ENST00000524565 872 ntTSL 3 BASIC16.9■□□□□ 0.3
HDDC3Q8N4P3 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC16.9■□□□□ 0.3
HDDC3Q8N4P3 AP000275.2-202ENST00000553001 929 ntTSL 5 BASIC16.9■□□□□ 0.3
HDDC3Q8N4P3 AC243562.1-201ENST00000560672 389 ntBASIC16.9■□□□□ 0.3
HDDC3Q8N4P3 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC16.9■□□□□ 0.3
HDDC3Q8N4P3 AP001350.2-201ENST00000625104 1094 ntBASIC16.9■□□□□ 0.3
HDDC3Q8N4P3 FO681492.1-201ENST00000623662 5321 ntAPPRIS P5 TSL 2 BASIC16.9■□□□□ 0.3
HDDC3Q8N4P3 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
HDDC3Q8N4P3 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
HDDC3Q8N4P3 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC16.9■□□□□ 0.3
HDDC3Q8N4P3 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC16.9■□□□□ 0.3
HDDC3Q8N4P3 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
HDDC3Q8N4P3 AKAP8P1-201ENST00000434743 1349 ntBASIC16.9■□□□□ 0.3
HDDC3Q8N4P3 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
HDDC3Q8N4P3 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
HDDC3Q8N4P3 SLC8A3-202ENST00000356921 5250 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
HDDC3Q8N4P3 ACP5-203ENST00000433365 1397 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
HDDC3Q8N4P3 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC16.89■□□□□ 0.3
HDDC3Q8N4P3 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.3
HDDC3Q8N4P3 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.3
HDDC3Q8N4P3 MINDY2-202ENST00000450403 4820 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
HDDC3Q8N4P3 AL133373.2-201ENST00000623187 2828 ntBASIC16.89■□□□□ 0.29
HDDC3Q8N4P3 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
HDDC3Q8N4P3 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
HDDC3Q8N4P3 KRT8P49-201ENST00000604166 1432 ntBASIC16.89■□□□□ 0.29
HDDC3Q8N4P3 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
HDDC3Q8N4P3 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
HDDC3Q8N4P3 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
HDDC3Q8N4P3 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
HDDC3Q8N4P3 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
HDDC3Q8N4P3 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
HDDC3Q8N4P3 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
HDDC3Q8N4P3 FXYD1-202ENST00000455515 594 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.29
HDDC3Q8N4P3 POLD4-211ENST00000539074 714 ntTSL 3 BASIC16.89■□□□□ 0.29
HDDC3Q8N4P3 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC16.89■□□□□ 0.29
HDDC3Q8N4P3 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
HDDC3Q8N4P3 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC16.89■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 37.5 ms