Protein–RNA interactions for Protein: Q8N205

SYNE4, Nesprin-4, humanhuman

Predictions only

Length 404 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE4Q8N205 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
SYNE4Q8N205 PCDHB17P-201ENST00000539533 2393 ntBASIC20.87■□□□□ 0.93
SYNE4Q8N205 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SYNE4Q8N205 SNX33P1-201ENST00000592116 1762 ntBASIC20.87■□□□□ 0.93
SYNE4Q8N205 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SYNE4Q8N205 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SYNE4Q8N205 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
SYNE4Q8N205 EIF4E1B-201ENST00000318682 1974 ntAPPRIS P1 TSL 5 BASIC20.86■□□□□ 0.93
SYNE4Q8N205 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
SYNE4Q8N205 CD1B-201ENST00000368168 1395 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SYNE4Q8N205 CPSF6-203ENST00000456847 1915 ntTSL 5 BASIC20.86■□□□□ 0.93
SYNE4Q8N205 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC20.86■□□□□ 0.93
SYNE4Q8N205 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC20.86■□□□□ 0.93
SYNE4Q8N205 PRMT2-208ENST00000451211 1878 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
SYNE4Q8N205 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SYNE4Q8N205 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SYNE4Q8N205 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC20.86■□□□□ 0.93
SYNE4Q8N205 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC20.86■□□□□ 0.93
SYNE4Q8N205 COX6A1-201ENST00000229379 572 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SYNE4Q8N205 TNNT3-204ENST00000381558 1258 ntAPPRIS ALT2 TSL 5 BASIC20.86■□□□□ 0.93
SYNE4Q8N205 GRAP-202ENST00000395635 834 ntTSL 2 BASIC20.86■□□□□ 0.93
SYNE4Q8N205 HFE-208ENST00000397022 1280 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
SYNE4Q8N205 FLG-AS1-204ENST00000420707 906 ntTSL 5 BASIC20.86■□□□□ 0.93
SYNE4Q8N205 IL32-206ENST00000440815 920 ntAPPRIS P4 TSL 2 BASIC20.86■□□□□ 0.93
SYNE4Q8N205 IL32-207ENST00000444393 892 ntAPPRIS P4 TSL 2 BASIC20.86■□□□□ 0.93
SYNE4Q8N205 RAB3A-202ENST00000464076 1253 ntTSL 2 BASIC20.86■□□□□ 0.93
SYNE4Q8N205 HFE-214ENST00000488199 781 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
SYNE4Q8N205 MEIS3P1-201ENST00000495167 958 ntBASIC20.86■□□□□ 0.93
SYNE4Q8N205 IL32-219ENST00000531965 746 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
SYNE4Q8N205 IL32-226ENST00000548476 1014 ntAPPRIS ALT2 TSL 2 BASIC20.86■□□□□ 0.93
SYNE4Q8N205 RIC8B-209ENST00000549643 571 ntTSL 4 BASIC20.86■□□□□ 0.93
SYNE4Q8N205 TNNT1-211ENST00000588426 683 ntTSL 5 BASIC20.86■□□□□ 0.93
SYNE4Q8N205 AC092070.4-201ENST00000599803 507 ntTSL 5 BASIC20.86■□□□□ 0.93
SYNE4Q8N205 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC20.86■□□□□ 0.93
SYNE4Q8N205 COQ4-205ENST00000609948 956 ntTSL 2 BASIC20.86■□□□□ 0.93
SYNE4Q8N205 AL008721.1-201ENST00000609964 604 ntBASIC20.86■□□□□ 0.93
SYNE4Q8N205 FKBP4-208ENST00000630279 156 ntTSL 5 BASIC20.86■□□□□ 0.93
SYNE4Q8N205 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC20.86■□□□□ 0.93
SYNE4Q8N205 RPAIN-203ENST00000381209 1535 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SYNE4Q8N205 GATB-209ENST00000512306 1519 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
SYNE4Q8N205 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
SYNE4Q8N205 FHL2-201ENST00000322142 1462 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SYNE4Q8N205 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC20.86■□□□□ 0.93
SYNE4Q8N205 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC20.86■□□□□ 0.93
SYNE4Q8N205 ASAH1-231ENST00000636577 2129 ntTSL 5 BASIC20.86■□□□□ 0.93
SYNE4Q8N205 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC20.86■□□□□ 0.93
SYNE4Q8N205 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC20.86■□□□□ 0.93
SYNE4Q8N205 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SYNE4Q8N205 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC20.85■□□□□ 0.93
SYNE4Q8N205 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
SYNE4Q8N205 EIF5A-206ENST00000571955 1366 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
SYNE4Q8N205 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
SYNE4Q8N205 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC20.85■□□□□ 0.93
SYNE4Q8N205 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
SYNE4Q8N205 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC20.85■□□□□ 0.93
SYNE4Q8N205 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
SYNE4Q8N205 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
SYNE4Q8N205 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
SYNE4Q8N205 PNKD-201ENST00000248451 758 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
SYNE4Q8N205 AL365255.1-202ENST00000413887 363 ntTSL 5 BASIC20.85■□□□□ 0.93
SYNE4Q8N205 MRPS18AP1-201ENST00000414458 589 ntBASIC20.85■□□□□ 0.93
SYNE4Q8N205 AC007274.1-201ENST00000439805 662 ntBASIC20.85■□□□□ 0.93
SYNE4Q8N205 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC20.85■□□□□ 0.93
SYNE4Q8N205 SNX21-206ENST00000462307 1043 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
SYNE4Q8N205 RAB30-AS1-202ENST00000526795 567 ntTSL 5 BASIC20.85■□□□□ 0.93
SYNE4Q8N205 FAM92A-219ENST00000620645 1014 ntAPPRIS ALT2 TSL 5 BASIC20.85■□□□□ 0.93
SYNE4Q8N205 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC20.85■□□□□ 0.93
SYNE4Q8N205 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
SYNE4Q8N205 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC20.85■□□□□ 0.93
SYNE4Q8N205 B3GNT3-201ENST00000318683 2226 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
SYNE4Q8N205 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC20.85■□□□□ 0.93
SYNE4Q8N205 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
SYNE4Q8N205 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC20.84■□□□□ 0.93
SYNE4Q8N205 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC20.84■□□□□ 0.93
SYNE4Q8N205 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
SYNE4Q8N205 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
SYNE4Q8N205 HPCAL1-208ENST00000622018 1535 ntAPPRIS P1 TSL 5 BASIC20.84■□□□□ 0.93
SYNE4Q8N205 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC20.84■□□□□ 0.93
SYNE4Q8N205 THOC7-201ENST00000295899 990 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
SYNE4Q8N205 UFL1-AS1-201ENST00000430796 548 ntTSL 3 BASIC20.84■□□□□ 0.93
SYNE4Q8N205 AL807752.4-201ENST00000439076 580 ntTSL 2 BASIC20.84■□□□□ 0.93
SYNE4Q8N205 SMIM15-AS1-201ENST00000506902 796 ntTSL 3 BASIC20.84■□□□□ 0.93
SYNE4Q8N205 SECTM1-202ENST00000580437 1030 ntAPPRIS ALT2 TSL 2 BASIC20.84■□□□□ 0.93
SYNE4Q8N205 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
SYNE4Q8N205 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
SYNE4Q8N205 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC20.84■□□□□ 0.93
SYNE4Q8N205 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC20.84■□□□□ 0.93
SYNE4Q8N205 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
SYNE4Q8N205 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC20.84■□□□□ 0.93
SYNE4Q8N205 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
SYNE4Q8N205 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC20.84■□□□□ 0.93
SYNE4Q8N205 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC20.83■□□□□ 0.93
SYNE4Q8N205 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
SYNE4Q8N205 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC20.83■□□□□ 0.93
SYNE4Q8N205 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC20.83■□□□□ 0.93
SYNE4Q8N205 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC20.83■□□□□ 0.93
SYNE4Q8N205 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC20.83■□□□□ 0.93
SYNE4Q8N205 HEY1-208ENST00000523976 1325 ntTSL 2 BASIC20.83■□□□□ 0.93
SYNE4Q8N205 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
SYNE4Q8N205 BANP-227ENST00000626016 2144 ntTSL 2 BASIC20.83■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 43 ms