Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
SKA3Q8IX90 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
SKA3Q8IX90 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC15□□□□□ -0.01
SKA3Q8IX90 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC15□□□□□ -0.01
SKA3Q8IX90 CENPM-204ENST00000402420 688 ntTSL 5 BASIC15□□□□□ -0.01
SKA3Q8IX90 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
SKA3Q8IX90 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC15□□□□□ -0.01
SKA3Q8IX90 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC15□□□□□ -0.01
SKA3Q8IX90 AL662844.1-201ENST00000546340 181 ntBASIC15□□□□□ -0.01
SKA3Q8IX90 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC15□□□□□ -0.01
SKA3Q8IX90 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
SKA3Q8IX90 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC15□□□□□ -0.01
SKA3Q8IX90 SCRIB-203ENST00000377533 5108 ntAPPRIS ALT2 TSL 1 (best) BASIC15□□□□□ -0.01
SKA3Q8IX90 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
SKA3Q8IX90 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC15□□□□□ -0.01
SKA3Q8IX90 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
SKA3Q8IX90 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC15□□□□□ -0.01
SKA3Q8IX90 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC15□□□□□ -0.01
SKA3Q8IX90 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
SKA3Q8IX90 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC15□□□□□ -0.01
SKA3Q8IX90 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC15□□□□□ -0.01
SKA3Q8IX90 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC15□□□□□ -0.01
SKA3Q8IX90 HNRNPA0-201ENST00000314940 8726 ntAPPRIS P1 BASIC15□□□□□ -0.01
SKA3Q8IX90 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC15□□□□□ -0.01
SKA3Q8IX90 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC15□□□□□ -0.01
SKA3Q8IX90 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
SKA3Q8IX90 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC15□□□□□ -0.01
SKA3Q8IX90 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
SKA3Q8IX90 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC14.99□□□□□ -0.01
SKA3Q8IX90 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC14.99□□□□□ -0.01
SKA3Q8IX90 COL4A3BP-204ENST00000405807 2843 ntAPPRIS P1 TSL 5 BASIC14.99□□□□□ -0.01
SKA3Q8IX90 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC14.99□□□□□ -0.01
SKA3Q8IX90 PDE8B-201ENST00000264917 5956 ntAPPRIS P3 TSL 1 (best) BASIC14.99□□□□□ -0.01
SKA3Q8IX90 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
SKA3Q8IX90 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC14.99□□□□□ -0.01
SKA3Q8IX90 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
SKA3Q8IX90 AC022211.2-201ENST00000585075 2527 ntBASIC14.99□□□□□ -0.01
SKA3Q8IX90 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC14.99□□□□□ -0.01
SKA3Q8IX90 HELZ2-202ENST00000427522 7827 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
SKA3Q8IX90 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC14.99□□□□□ -0.01
SKA3Q8IX90 AP002414.1-201ENST00000391405 1147 ntBASIC14.99□□□□□ -0.01
SKA3Q8IX90 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
SKA3Q8IX90 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC14.99□□□□□ -0.01
SKA3Q8IX90 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC14.99□□□□□ -0.01
SKA3Q8IX90 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC14.99□□□□□ -0.01
SKA3Q8IX90 AC136632.2-201ENST00000512891 861 ntBASIC14.99□□□□□ -0.01
SKA3Q8IX90 RNA5SP419-201ENST00000515908 135 ntBASIC14.99□□□□□ -0.01
SKA3Q8IX90 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC14.99□□□□□ -0.01
SKA3Q8IX90 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC14.99□□□□□ -0.01
SKA3Q8IX90 AP001005.1-201ENST00000571755 1248 ntBASIC14.99□□□□□ -0.01
SKA3Q8IX90 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC14.99□□□□□ -0.01
SKA3Q8IX90 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC14.99□□□□□ -0.01
SKA3Q8IX90 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC14.99□□□□□ -0.01
SKA3Q8IX90 GAS7-213ENST00000580865 2417 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
SKA3Q8IX90 STUM-201ENST00000366788 7705 ntAPPRIS P2 TSL 5 BASIC14.99□□□□□ -0.01
SKA3Q8IX90 IL12RB2-201ENST00000262345 4040 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
SKA3Q8IX90 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
SKA3Q8IX90 ADGRB2-206ENST00000398556 4879 ntAPPRIS ALT2 TSL 5 BASIC14.99□□□□□ -0.01
SKA3Q8IX90 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
SKA3Q8IX90 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC14.99□□□□□ -0.01
SKA3Q8IX90 MDGA2-202ENST00000399232 5075 ntAPPRIS ALT2 TSL 1 (best) BASIC14.99□□□□□ -0.01
SKA3Q8IX90 NCAPD2-201ENST00000315579 5548 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
SKA3Q8IX90 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC14.99□□□□□ -0.01
SKA3Q8IX90 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
SKA3Q8IX90 KAZN-201ENST00000361144 3838 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
SKA3Q8IX90 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC14.99□□□□□ -0.01
SKA3Q8IX90 COPS7B-206ENST00000410017 2051 ntTSL 3 BASIC14.99□□□□□ -0.01
SKA3Q8IX90 ELMSAN1-201ENST00000286523 8091 ntAPPRIS P2 TSL 1 (best) BASIC14.99□□□□□ -0.01
SKA3Q8IX90 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC14.99□□□□□ -0.01
SKA3Q8IX90 HCRTR1-203ENST00000403528 2003 ntAPPRIS P1 TSL 5 BASIC14.99□□□□□ -0.01
SKA3Q8IX90 NOMO2-211ENST00000621364 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
SKA3Q8IX90 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC14.98□□□□□ -0.01
SKA3Q8IX90 TLE4-206ENST00000376552 3695 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
SKA3Q8IX90 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
SKA3Q8IX90 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
SKA3Q8IX90 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC14.98□□□□□ -0.01
SKA3Q8IX90 NUTM2F-201ENST00000253262 2561 ntAPPRIS P2 TSL 1 (best) BASIC14.98□□□□□ -0.01
SKA3Q8IX90 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC14.98□□□□□ -0.01
SKA3Q8IX90 SRSF12-201ENST00000452027 3599 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
SKA3Q8IX90 HLA-A-201ENST00000376802 1334 ntBASIC14.98□□□□□ -0.01
SKA3Q8IX90 CHAT-205ENST00000395562 2528 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
SKA3Q8IX90 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
SKA3Q8IX90 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
SKA3Q8IX90 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
SKA3Q8IX90 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC14.98□□□□□ -0.01
SKA3Q8IX90 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
SKA3Q8IX90 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC14.98□□□□□ -0.01
SKA3Q8IX90 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC14.98□□□□□ -0.01
SKA3Q8IX90 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC14.98□□□□□ -0.01
SKA3Q8IX90 RPS15P9-201ENST00000494093 319 ntBASIC14.98□□□□□ -0.01
SKA3Q8IX90 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC14.98□□□□□ -0.01
SKA3Q8IX90 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC14.98□□□□□ -0.01
SKA3Q8IX90 KLK8-205ENST00000593490 267 ntTSL 3 BASIC14.98□□□□□ -0.01
SKA3Q8IX90 TERC-201ENST00000602385 541 ntBASIC14.98□□□□□ -0.01
SKA3Q8IX90 AL356488.2-201ENST00000602755 427 ntBASIC14.98□□□□□ -0.01
SKA3Q8IX90 PRKN-208ENST00000610470 531 ntTSL 2 BASIC14.98□□□□□ -0.01
SKA3Q8IX90 PRKN-209ENST00000612485 225 ntTSL 5 BASIC14.98□□□□□ -0.01
SKA3Q8IX90 MIR7706-201ENST00000613747 67 ntBASIC14.98□□□□□ -0.01
SKA3Q8IX90 GPX4-212ENST00000616066 924 ntAPPRIS ALT1 TSL 5 BASIC14.98□□□□□ -0.01
SKA3Q8IX90 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC14.98□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 29 ms