Protein–RNA interactions for Protein: P49238

CX3CR1, CX3C chemokine receptor 1, humanhuman

Predictions only

Length 355 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CR1P49238 MPIG6B-204ENST00000375809 2396 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
CX3CR1P49238 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC14.89□□□□□ -0.03
CX3CR1P49238 TTC8-216ENST00000614125 2377 ntTSL 5 BASIC14.89□□□□□ -0.03
CX3CR1P49238 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC14.89□□□□□ -0.03
CX3CR1P49238 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC14.89□□□□□ -0.03
CX3CR1P49238 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
CX3CR1P49238 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
CX3CR1P49238 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
CX3CR1P49238 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC14.89□□□□□ -0.03
CX3CR1P49238 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC14.89□□□□□ -0.03
CX3CR1P49238 NABP1-203ENST00000409510 843 ntTSL 5 BASIC14.89□□□□□ -0.03
CX3CR1P49238 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC14.89□□□□□ -0.03
CX3CR1P49238 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC14.89□□□□□ -0.03
CX3CR1P49238 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC14.89□□□□□ -0.03
CX3CR1P49238 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC14.89□□□□□ -0.03
CX3CR1P49238 NBPF14-202ENST00000593495 1082 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
CX3CR1P49238 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC14.89□□□□□ -0.03
CX3CR1P49238 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
CX3CR1P49238 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC14.89□□□□□ -0.03
CX3CR1P49238 HNRNPRP1-201ENST00000453465 1695 ntBASIC14.89□□□□□ -0.03
CX3CR1P49238 EVPLL-201ENST00000399134 2095 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
CX3CR1P49238 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
CX3CR1P49238 SHANK3-201ENST00000262795 7091 ntAPPRIS P5 TSL 5 BASIC14.89□□□□□ -0.03
CX3CR1P49238 SMARCA4-201ENST00000344626 5392 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
CX3CR1P49238 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC14.89□□□□□ -0.03
CX3CR1P49238 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
CX3CR1P49238 TTLL5-219ENST00000556977 1961 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
CX3CR1P49238 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC14.89□□□□□ -0.03
CX3CR1P49238 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC14.89□□□□□ -0.03
CX3CR1P49238 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC14.89□□□□□ -0.03
CX3CR1P49238 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC14.89□□□□□ -0.03
CX3CR1P49238 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC14.88□□□□□ -0.03
CX3CR1P49238 TTC24-201ENST00000368236 2005 ntAPPRIS P1 TSL 5 BASIC14.88□□□□□ -0.03
CX3CR1P49238 MFSD11-207ENST00000586622 2952 ntAPPRIS P1 TSL 5 BASIC14.88□□□□□ -0.03
CX3CR1P49238 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC14.88□□□□□ -0.03
CX3CR1P49238 NBPF15-202ENST00000488031 4535 ntAPPRIS P1 TSL 5 BASIC14.88□□□□□ -0.03
CX3CR1P49238 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
CX3CR1P49238 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
CX3CR1P49238 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC14.88□□□□□ -0.03
CX3CR1P49238 GLDC-201ENST00000321612 3900 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
CX3CR1P49238 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
CX3CR1P49238 TMEM229B-201ENST00000357461 4068 ntAPPRIS P1 TSL 2 BASIC14.88□□□□□ -0.03
CX3CR1P49238 PDCD2-208ENST00000541970 3378 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
CX3CR1P49238 AC092171.3-201ENST00000610122 2651 ntBASIC14.88□□□□□ -0.03
CX3CR1P49238 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
CX3CR1P49238 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
CX3CR1P49238 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
CX3CR1P49238 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
CX3CR1P49238 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
CX3CR1P49238 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
CX3CR1P49238 EMD-201ENST00000369835 966 ntTSL 3 BASIC14.88□□□□□ -0.03
CX3CR1P49238 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
CX3CR1P49238 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC14.88□□□□□ -0.03
CX3CR1P49238 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC14.88□□□□□ -0.03
CX3CR1P49238 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC14.88□□□□□ -0.03
CX3CR1P49238 AC106795.1-205ENST00000512851 1056 ntBASIC14.88□□□□□ -0.03
CX3CR1P49238 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC14.88□□□□□ -0.03
CX3CR1P49238 NCF1C-201ENST00000438382 1427 ntBASIC14.88□□□□□ -0.03
CX3CR1P49238 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
CX3CR1P49238 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC14.88□□□□□ -0.03
CX3CR1P49238 COQ8A-202ENST00000366778 2743 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
CX3CR1P49238 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
CX3CR1P49238 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC14.88□□□□□ -0.03
CX3CR1P49238 ACE-204ENST00000428043 5120 ntTSL 2 BASIC14.88□□□□□ -0.03
CX3CR1P49238 COG5-203ENST00000393603 5418 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
CX3CR1P49238 SYNC-202ENST00000409190 3398 ntAPPRIS P3 TSL 2 BASIC14.88□□□□□ -0.03
CX3CR1P49238 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
CX3CR1P49238 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
CX3CR1P49238 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
CX3CR1P49238 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
CX3CR1P49238 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC14.88□□□□□ -0.03
CX3CR1P49238 HNRNPA3-201ENST00000392524 2067 ntAPPRIS P3 TSL 5 BASIC14.88□□□□□ -0.03
CX3CR1P49238 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
CX3CR1P49238 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
CX3CR1P49238 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
CX3CR1P49238 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC14.88□□□□□ -0.03
CX3CR1P49238 ITPK1-210ENST00000556603 3174 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
CX3CR1P49238 BCL11A-201ENST00000335712 5942 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
CX3CR1P49238 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC14.87□□□□□ -0.03
CX3CR1P49238 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC14.87□□□□□ -0.03
CX3CR1P49238 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
CX3CR1P49238 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC14.87□□□□□ -0.03
CX3CR1P49238 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC14.87□□□□□ -0.03
CX3CR1P49238 AL021920.2-201ENST00000624828 1351 ntBASIC14.87□□□□□ -0.03
CX3CR1P49238 KAZN-201ENST00000361144 3838 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
CX3CR1P49238 LBX1-201ENST00000370193 2900 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
CX3CR1P49238 DOLPP1-202ENST00000372546 2177 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
CX3CR1P49238 SFXN1-201ENST00000321442 4231 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
CX3CR1P49238 EPN2-201ENST00000314728 4871 ntAPPRIS P4 TSL 1 (best) BASIC14.87□□□□□ -0.03
CX3CR1P49238 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
CX3CR1P49238 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
CX3CR1P49238 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC14.87□□□□□ -0.03
CX3CR1P49238 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
CX3CR1P49238 F11R-206ENST00000621309 4770 ntTSL 5 BASIC14.87□□□□□ -0.03
CX3CR1P49238 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
CX3CR1P49238 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC14.87□□□□□ -0.03
CX3CR1P49238 RBM17P3-201ENST00000417687 1192 ntBASIC14.87□□□□□ -0.03
CX3CR1P49238 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
CX3CR1P49238 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC14.87□□□□□ -0.03
CX3CR1P49238 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC14.87□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 29.5 ms