Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 AC004840.1-201ENST00000636359 365 ntBASIC17.24■□□□□ 0.35
COL9A1P20849 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC17.24■□□□□ 0.35
COL9A1P20849 HARS-203ENST00000431330 1774 ntTSL 2 BASIC17.24■□□□□ 0.35
COL9A1P20849 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
COL9A1P20849 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
COL9A1P20849 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
COL9A1P20849 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC17.24■□□□□ 0.35
COL9A1P20849 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC17.24■□□□□ 0.35
COL9A1P20849 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
COL9A1P20849 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC17.24■□□□□ 0.35
COL9A1P20849 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
COL9A1P20849 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
COL9A1P20849 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
COL9A1P20849 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC17.24■□□□□ 0.35
COL9A1P20849 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC17.24■□□□□ 0.35
COL9A1P20849 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
COL9A1P20849 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC17.23■□□□□ 0.35
COL9A1P20849 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC17.23■□□□□ 0.35
COL9A1P20849 GPX3-210ENST00000622181 1757 ntAPPRIS ALT1 TSL 5 BASIC17.23■□□□□ 0.35
COL9A1P20849 BANF1-201ENST00000312175 1155 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
COL9A1P20849 HIST1H2AJ-201ENST00000333151 387 ntAPPRIS P1 BASIC17.23■□□□□ 0.35
COL9A1P20849 CCDC84-201ENST00000334418 1202 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
COL9A1P20849 SFT2D2-202ENST00000367829 491 ntTSL 5 BASIC17.23■□□□□ 0.35
COL9A1P20849 HFE-208ENST00000397022 1280 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
COL9A1P20849 AC105940.2-201ENST00000421055 380 ntTSL 3 BASIC17.23■□□□□ 0.35
COL9A1P20849 HOXB-AS1-201ENST00000435312 806 ntTSL 5 BASIC17.23■□□□□ 0.35
COL9A1P20849 SFTPC-202ENST00000437090 773 ntTSL 3 BASIC17.23■□□□□ 0.35
COL9A1P20849 AL158198.1-201ENST00000449143 380 ntTSL 3 BASIC17.23■□□□□ 0.35
COL9A1P20849 AC007389.4-201ENST00000454674 793 ntBASIC17.23■□□□□ 0.35
COL9A1P20849 HFE-214ENST00000488199 781 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
COL9A1P20849 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
COL9A1P20849 AC111170.2-201ENST00000585369 768 ntTSL 3 BASIC17.23■□□□□ 0.35
COL9A1P20849 RPL35-206ENST00000629845 340 ntTSL 5 BASIC17.23■□□□□ 0.35
COL9A1P20849 AC114737.3-201ENST00000636708 570 ntTSL 4 BASIC17.23■□□□□ 0.35
COL9A1P20849 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC17.23■□□□□ 0.35
COL9A1P20849 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
COL9A1P20849 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
COL9A1P20849 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
COL9A1P20849 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
COL9A1P20849 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
COL9A1P20849 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
COL9A1P20849 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
COL9A1P20849 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
COL9A1P20849 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
COL9A1P20849 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC17.22■□□□□ 0.35
COL9A1P20849 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC17.22■□□□□ 0.35
COL9A1P20849 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
COL9A1P20849 MYL12B-201ENST00000237500 1210 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
COL9A1P20849 IGF1-201ENST00000307046 1097 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
COL9A1P20849 AGER-203ENST00000375065 665 ntTSL 2 BASIC17.22■□□□□ 0.35
COL9A1P20849 NME9-203ENST00000383180 2133 ntTSL 2 BASIC17.22■□□□□ 0.35
COL9A1P20849 IGF1-203ENST00000392904 761 ntTSL 5 BASIC17.22■□□□□ 0.35
COL9A1P20849 MAGEA12-203ENST00000393900 1299 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
COL9A1P20849 CYB5A-203ENST00000397914 619 ntTSL 3 BASIC17.22■□□□□ 0.35
COL9A1P20849 AC104457.1-201ENST00000401024 814 ntBASIC17.22■□□□□ 0.35
COL9A1P20849 OSM-203ENST00000403463 464 ntTSL 3 BASIC17.22■□□□□ 0.35
COL9A1P20849 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
COL9A1P20849 SVIL-AS1-208ENST00000446807 1007 ntTSL 3 BASIC17.22■□□□□ 0.35
COL9A1P20849 APOPT1-207ENST00000477116 906 ntTSL 3 BASIC17.22■□□□□ 0.35
COL9A1P20849 LAMA5-AS1-203ENST00000478167 690 ntTSL 3 BASIC17.22■□□□□ 0.35
COL9A1P20849 PTPRVP-202ENST00000490575 953 ntTSL 5 BASIC17.22■□□□□ 0.35
COL9A1P20849 AC091917.2-201ENST00000505002 744 ntBASIC17.22■□□□□ 0.35
COL9A1P20849 AC104596.1-201ENST00000507826 579 ntTSL 4 BASIC17.22■□□□□ 0.35
COL9A1P20849 AC093831.1-201ENST00000509166 434 ntTSL 3 BASIC17.22■□□□□ 0.35
COL9A1P20849 ZNF767P-206ENST00000513792 565 ntBASIC17.22■□□□□ 0.35
COL9A1P20849 AKIP1-210ENST00000534147 1022 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
COL9A1P20849 AC027601.2-201ENST00000571085 805 ntTSL 5 BASIC17.22■□□□□ 0.35
COL9A1P20849 AC040162.1-202ENST00000573493 573 ntAPPRIS P1 TSL 3 BASIC17.22■□□□□ 0.35
COL9A1P20849 AC087645.2-202ENST00000586583 643 ntTSL 4 BASIC17.22■□□□□ 0.35
COL9A1P20849 TMEM205-216ENST00000593256 792 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
COL9A1P20849 FLT3LG-205ENST00000596435 1034 ntTSL 5 BASIC17.22■□□□□ 0.35
COL9A1P20849 RPS5-209ENST00000601521 1203 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
COL9A1P20849 AC097634.3-201ENST00000613067 820 ntTSL 3 BASIC17.22■□□□□ 0.35
COL9A1P20849 WNT11-204ENST00000621122 789 ntTSL 5 BASIC17.22■□□□□ 0.35
COL9A1P20849 AC148477.9-201ENST00000623974 539 ntBASIC17.22■□□□□ 0.35
COL9A1P20849 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
COL9A1P20849 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
COL9A1P20849 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
COL9A1P20849 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
COL9A1P20849 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC17.22■□□□□ 0.35
COL9A1P20849 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
COL9A1P20849 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC17.22■□□□□ 0.35
COL9A1P20849 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC17.22■□□□□ 0.35
COL9A1P20849 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
COL9A1P20849 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC17.21■□□□□ 0.35
COL9A1P20849 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
COL9A1P20849 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC17.21■□□□□ 0.35
COL9A1P20849 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
COL9A1P20849 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
COL9A1P20849 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
COL9A1P20849 ENOSF1-202ENST00000340116 1658 ntTSL 5 BASIC17.21■□□□□ 0.35
COL9A1P20849 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
COL9A1P20849 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC17.21■□□□□ 0.35
COL9A1P20849 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
COL9A1P20849 KLK15-201ENST00000326856 1389 ntAPPRIS ALT1 TSL 5 BASIC17.21■□□□□ 0.35
COL9A1P20849 C2orf40-201ENST00000238044 789 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
COL9A1P20849 TNNI1-203ENST00000367312 1100 ntAPPRIS P2 TSL 5 BASIC17.21■□□□□ 0.35
COL9A1P20849 EVA1A-204ENST00000410071 777 ntAPPRIS P2 TSL 3 BASIC17.21■□□□□ 0.35
COL9A1P20849 AL355334.1-201ENST00000417713 215 ntBASIC17.21■□□□□ 0.35
COL9A1P20849 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC17.21■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 29.1 ms