Protein–RNA interactions for Protein: O14562

UBFD1, Ubiquitin domain-containing protein UBFD1, humanhuman

Known RBP Predictions only

Length 309 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBFD1O14562 SLC27A6-201ENST00000262462 3219 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
UBFD1O14562 BCRP2-201ENST00000398241 1842 ntTSL 2 BASIC16.41■□□□□ 0.22
UBFD1O14562 DYRK1B-205ENST00000597639 1806 ntTSL 5 BASIC16.41■□□□□ 0.22
UBFD1O14562 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC16.41■□□□□ 0.22
UBFD1O14562 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
UBFD1O14562 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
UBFD1O14562 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC16.41■□□□□ 0.22
UBFD1O14562 ISOC2-202ENST00000425675 998 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
UBFD1O14562 KRT16P4-201ENST00000453883 522 ntBASIC16.41■□□□□ 0.22
UBFD1O14562 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC16.41■□□□□ 0.22
UBFD1O14562 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC16.41■□□□□ 0.22
UBFD1O14562 AC103957.2-201ENST00000521218 510 ntTSL 2 BASIC16.41■□□□□ 0.22
UBFD1O14562 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC16.41■□□□□ 0.22
UBFD1O14562 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC16.41■□□□□ 0.22
UBFD1O14562 NKAPP1-205ENST00000585790 367 ntBASIC16.41■□□□□ 0.22
UBFD1O14562 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC16.41■□□□□ 0.22
UBFD1O14562 KMT5A-202ENST00000402868 3140 ntAPPRIS P2 TSL 1 (best) BASIC16.41■□□□□ 0.22
UBFD1O14562 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
UBFD1O14562 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC16.41■□□□□ 0.22
UBFD1O14562 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
UBFD1O14562 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
UBFD1O14562 COQ8B-202ENST00000324464 2443 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
UBFD1O14562 GALE-216ENST00000617979 1566 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
UBFD1O14562 RECK-201ENST00000377966 4888 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
UBFD1O14562 RABEP1-202ENST00000537505 5365 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
UBFD1O14562 LTF-203ENST00000426532 2494 ntTSL 2 BASIC16.41■□□□□ 0.22
UBFD1O14562 PHTF1-205ENST00000393357 3244 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
UBFD1O14562 POLR3H-202ENST00000355209 4416 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
UBFD1O14562 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC16.41■□□□□ 0.22
UBFD1O14562 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
UBFD1O14562 PHF12-205ENST00000577226 7679 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
UBFD1O14562 IQSEC2-202ENST00000396435 6015 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
UBFD1O14562 SIGLEC10-205ENST00000439889 2126 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
UBFD1O14562 TBC1D3D-201ENST00000616101 2116 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
UBFD1O14562 TBC1D3K-201ENST00000620247 2116 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
UBFD1O14562 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
UBFD1O14562 LTK-204ENST00000561619 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
UBFD1O14562 AL671710.1-201ENST00000610245 2349 ntBASIC16.4■□□□□ 0.22
UBFD1O14562 SLC6A9-204ENST00000372307 2162 ntTSL 2 BASIC16.4■□□□□ 0.22
UBFD1O14562 CIAPIN1-209ENST00000567518 2016 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
UBFD1O14562 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
UBFD1O14562 ZFAND5-204ENST00000376960 2686 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
UBFD1O14562 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
UBFD1O14562 MTHFR-217ENST00000641820 1569 ntBASIC16.4■□□□□ 0.22
UBFD1O14562 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC16.4■□□□□ 0.22
UBFD1O14562 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
UBFD1O14562 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
UBFD1O14562 SLC9A7-201ENST00000328306 3838 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
UBFD1O14562 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
UBFD1O14562 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
UBFD1O14562 UBE2C-204ENST00000356455 850 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
UBFD1O14562 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
UBFD1O14562 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
UBFD1O14562 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC16.4■□□□□ 0.22
UBFD1O14562 TPM1-226ENST00000560959 925 ntTSL 2 BASIC16.4■□□□□ 0.22
UBFD1O14562 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC16.4■□□□□ 0.22
UBFD1O14562 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
UBFD1O14562 AL139011.1-202ENST00000642063 584 ntBASIC16.4■□□□□ 0.22
UBFD1O14562 TBC1D2B-201ENST00000300584 6067 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
UBFD1O14562 NUTM2F-201ENST00000253262 2561 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
UBFD1O14562 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
UBFD1O14562 EWSR1-201ENST00000331029 2267 ntTSL 5 BASIC16.4■□□□□ 0.22
UBFD1O14562 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
UBFD1O14562 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
UBFD1O14562 KIF16B-201ENST00000354981 5261 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
UBFD1O14562 AP001372.2-201ENST00000526036 2493 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
UBFD1O14562 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
UBFD1O14562 WNT10B-203ENST00000407467 1802 ntTSL 2 BASIC16.4■□□□□ 0.22
UBFD1O14562 AC105760.2-201ENST00000418430 2341 ntTSL 2 BASIC16.4■□□□□ 0.22
UBFD1O14562 BTC-201ENST00000395743 2816 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
UBFD1O14562 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
UBFD1O14562 ZNF799-201ENST00000419318 3036 ntTSL 2 BASIC16.4■□□□□ 0.22
UBFD1O14562 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC16.4■□□□□ 0.22
UBFD1O14562 SLC27A5-201ENST00000263093 2361 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
UBFD1O14562 FDX1-201ENST00000260270 3206 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
UBFD1O14562 DIRC2-201ENST00000261038 3596 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.22
UBFD1O14562 PI4KAP1-201ENST00000610959 2425 ntTSL 2 BASIC16.39■□□□□ 0.21
UBFD1O14562 IQCC-202ENST00000537469 2252 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
UBFD1O14562 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
UBFD1O14562 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC16.39■□□□□ 0.21
UBFD1O14562 SLC9A5-201ENST00000299798 3736 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
UBFD1O14562 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
UBFD1O14562 NCF1C-201ENST00000438382 1427 ntBASIC16.39■□□□□ 0.21
UBFD1O14562 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
UBFD1O14562 ARVCF-204ENST00000406522 2682 ntTSL 5 BASIC16.39■□□□□ 0.21
UBFD1O14562 DGAT2-202ENST00000376262 2324 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
UBFD1O14562 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC16.39■□□□□ 0.21
UBFD1O14562 MAPK14-201ENST00000229794 3779 ntAPPRIS P5 TSL 1 (best) BASIC16.39■□□□□ 0.21
UBFD1O14562 CBSL-201ENST00000398168 2514 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
UBFD1O14562 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
UBFD1O14562 SLA2-202ENST00000360672 2171 ntTSL 5 BASIC16.39■□□□□ 0.21
UBFD1O14562 CDKN2AIP-203ENST00000504169 2721 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
UBFD1O14562 EMD-201ENST00000369835 966 ntTSL 3 BASIC16.39■□□□□ 0.21
UBFD1O14562 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
UBFD1O14562 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC16.39■□□□□ 0.21
UBFD1O14562 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
UBFD1O14562 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC16.39■□□□□ 0.21
UBFD1O14562 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC16.39■□□□□ 0.21
UBFD1O14562 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC16.39■□□□□ 0.21
UBFD1O14562 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 30.8 ms