Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 AC018470.1-201ENST00000624790 3129 ntBASIC17.34■□□□□ 0.37
TDP1Q9NUW8 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC17.34■□□□□ 0.37
TDP1Q9NUW8 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
TDP1Q9NUW8 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC17.34■□□□□ 0.37
TDP1Q9NUW8 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
TDP1Q9NUW8 AC108860.2-201ENST00000562760 2183 ntBASIC17.33■□□□□ 0.37
TDP1Q9NUW8 KRT84-201ENST00000257951 2092 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
TDP1Q9NUW8 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
TDP1Q9NUW8 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
TDP1Q9NUW8 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC17.33■□□□□ 0.37
TDP1Q9NUW8 TRPM2-202ENST00000300482 5989 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.37
TDP1Q9NUW8 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
TDP1Q9NUW8 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC17.33■□□□□ 0.36
TDP1Q9NUW8 LRRC37A5P-201ENST00000374304 1103 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
TDP1Q9NUW8 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC17.33■□□□□ 0.36
TDP1Q9NUW8 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC17.33■□□□□ 0.36
TDP1Q9NUW8 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC17.33■□□□□ 0.36
TDP1Q9NUW8 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC17.33■□□□□ 0.36
TDP1Q9NUW8 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
TDP1Q9NUW8 AP006333.1-201ENST00000543817 575 ntTSL 4 BASIC17.33■□□□□ 0.36
TDP1Q9NUW8 AC140878.1-201ENST00000565277 250 ntBASIC17.33■□□□□ 0.36
TDP1Q9NUW8 HCFC1R1-203ENST00000572355 610 ntTSL 3 BASIC17.33■□□□□ 0.36
TDP1Q9NUW8 AC104985.1-201ENST00000587528 507 ntTSL 3 BASIC17.33■□□□□ 0.36
TDP1Q9NUW8 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC17.33■□□□□ 0.36
TDP1Q9NUW8 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
TDP1Q9NUW8 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
TDP1Q9NUW8 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
TDP1Q9NUW8 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
TDP1Q9NUW8 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
TDP1Q9NUW8 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC17.33■□□□□ 0.36
TDP1Q9NUW8 POFUT2-201ENST00000331343 4825 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
TDP1Q9NUW8 NOC2LP2-201ENST00000407594 1944 ntBASIC17.33■□□□□ 0.36
TDP1Q9NUW8 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC17.33■□□□□ 0.36
TDP1Q9NUW8 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
TDP1Q9NUW8 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC17.32■□□□□ 0.36
TDP1Q9NUW8 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC17.32■□□□□ 0.36
TDP1Q9NUW8 DPEP1-203ENST00000421184 1647 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
TDP1Q9NUW8 SCLT1-205ENST00000503401 1604 ntAPPRIS ALT2 TSL 3 BASIC17.32■□□□□ 0.36
TDP1Q9NUW8 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
TDP1Q9NUW8 BHMT2-205ENST00000521567 1537 ntTSL 2 BASIC17.32■□□□□ 0.36
TDP1Q9NUW8 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
TDP1Q9NUW8 KCNV2-201ENST00000382082 2186 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
TDP1Q9NUW8 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC17.32■□□□□ 0.36
TDP1Q9NUW8 VASH1-201ENST00000167106 5728 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
TDP1Q9NUW8 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC17.32■□□□□ 0.36
TDP1Q9NUW8 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
TDP1Q9NUW8 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC17.32■□□□□ 0.36
TDP1Q9NUW8 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC17.32■□□□□ 0.36
TDP1Q9NUW8 CIB3-201ENST00000269878 711 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
TDP1Q9NUW8 CABP5-201ENST00000293255 1257 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
TDP1Q9NUW8 ZNF524-201ENST00000301073 1102 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
TDP1Q9NUW8 VCX-202ENST00000381059 967 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
TDP1Q9NUW8 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC17.32■□□□□ 0.36
TDP1Q9NUW8 BAD-202ENST00000394531 631 ntTSL 3 BASIC17.32■□□□□ 0.36
TDP1Q9NUW8 WRB-204ENST00000398753 699 ntTSL 3 BASIC17.32■□□□□ 0.36
TDP1Q9NUW8 BASP1P1-201ENST00000430708 665 ntBASIC17.32■□□□□ 0.36
TDP1Q9NUW8 NDUFAF2-203ENST00000511107 586 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
TDP1Q9NUW8 ASXL1-206ENST00000542461 1068 ntTSL 5 BASIC17.32■□□□□ 0.36
TDP1Q9NUW8 BAD-207ENST00000544785 525 ntTSL 3 BASIC17.32■□□□□ 0.36
TDP1Q9NUW8 AC124947.2-201ENST00000547118 1133 ntBASIC17.32■□□□□ 0.36
TDP1Q9NUW8 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC17.32■□□□□ 0.36
TDP1Q9NUW8 GREM1-201ENST00000560677 623 ntTSL 4 BASIC17.32■□□□□ 0.36
TDP1Q9NUW8 MIR4745-201ENST00000577608 62 ntBASIC17.32■□□□□ 0.36
TDP1Q9NUW8 AJ011932.1-201ENST00000621707 465 ntBASIC17.32■□□□□ 0.36
TDP1Q9NUW8 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
TDP1Q9NUW8 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
TDP1Q9NUW8 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
TDP1Q9NUW8 E2F2-201ENST00000361729 5191 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
TDP1Q9NUW8 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
TDP1Q9NUW8 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
TDP1Q9NUW8 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
TDP1Q9NUW8 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
TDP1Q9NUW8 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC17.31■□□□□ 0.36
TDP1Q9NUW8 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC17.31■□□□□ 0.36
TDP1Q9NUW8 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
TDP1Q9NUW8 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
TDP1Q9NUW8 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
TDP1Q9NUW8 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
TDP1Q9NUW8 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
TDP1Q9NUW8 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC17.31■□□□□ 0.36
TDP1Q9NUW8 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
TDP1Q9NUW8 TYRO3-201ENST00000263798 8207 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
TDP1Q9NUW8 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC17.31■□□□□ 0.36
TDP1Q9NUW8 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC17.31■□□□□ 0.36
TDP1Q9NUW8 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
TDP1Q9NUW8 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
TDP1Q9NUW8 TUBB8P12-201ENST00000308911 1335 ntBASIC17.31■□□□□ 0.36
TDP1Q9NUW8 TUBB7P-202ENST00000428444 1305 ntBASIC17.31■□□□□ 0.36
TDP1Q9NUW8 TUBB8P7-204ENST00000567960 1332 ntBASIC17.31■□□□□ 0.36
TDP1Q9NUW8 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
TDP1Q9NUW8 NKG7-201ENST00000221978 843 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
TDP1Q9NUW8 OSTC-201ENST00000361564 1077 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
TDP1Q9NUW8 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
TDP1Q9NUW8 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC17.31■□□□□ 0.36
TDP1Q9NUW8 INGX-202ENST00000489074 768 ntBASIC17.31■□□□□ 0.36
TDP1Q9NUW8 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC17.31■□□□□ 0.36
TDP1Q9NUW8 AL138918.1-201ENST00000568306 659 ntBASIC17.31■□□□□ 0.36
TDP1Q9NUW8 ZNF667-AS1-204ENST00000588158 921 ntTSL 3 BASIC17.31■□□□□ 0.36
TDP1Q9NUW8 NKG7-205ENST00000600427 520 ntTSL 3 BASIC17.31■□□□□ 0.36
TDP1Q9NUW8 PLA2G16-206ENST00000639271 957 ntTSL 5 BASIC17.31■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 24 ms