Protein–RNA interactions for Protein: Q709C8

VPS13C, Vacuolar protein sorting-associated protein 13C, humanhuman

Predictions only

Length 3,753 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13CQ709C8 ABTB1-201ENST00000232744 1965 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
VPS13CQ709C8 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC13.91□□□□□ -0.18
VPS13CQ709C8 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
VPS13CQ709C8 SOD1-201ENST00000270142 966 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
VPS13CQ709C8 LCE3A-201ENST00000335674 270 ntAPPRIS P1 BASIC13.91□□□□□ -0.18
VPS13CQ709C8 FCRLB-204ENST00000367946 1152 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
VPS13CQ709C8 SZT2-AS1-201ENST00000396885 699 ntTSL 3 BASIC13.91□□□□□ -0.18
VPS13CQ709C8 RHCE-206ENST00000413854 1198 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
VPS13CQ709C8 AP001107.3-201ENST00000534065 544 ntTSL 4 BASIC13.91□□□□□ -0.18
VPS13CQ709C8 AC034102.5-201ENST00000548731 540 ntTSL 4 BASIC13.91□□□□□ -0.18
VPS13CQ709C8 GADD45B-204ENST00000587345 765 ntTSL 2 BASIC13.91□□□□□ -0.18
VPS13CQ709C8 AC090164.3-201ENST00000610780 2143 ntBASIC13.91□□□□□ -0.18
VPS13CQ709C8 CLEC18C-201ENST00000314151 1934 ntAPPRIS P2 TSL 1 (best) BASIC13.91□□□□□ -0.18
VPS13CQ709C8 CLEC18A-208ENST00000568461 1934 ntAPPRIS P2 TSL 1 (best) BASIC13.91□□□□□ -0.18
VPS13CQ709C8 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC13.91□□□□□ -0.18
VPS13CQ709C8 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC13.91□□□□□ -0.18
VPS13CQ709C8 PGAP3-211ENST00000619169 2094 ntTSL 2 BASIC13.91□□□□□ -0.18
VPS13CQ709C8 PSMB9-207ENST00000374859 782 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
VPS13CQ709C8 PSMB9-208ENST00000395330 792 ntTSL 3 BASIC13.91□□□□□ -0.18
VPS13CQ709C8 CENPM-206ENST00000407253 818 ntTSL 2 BASIC13.91□□□□□ -0.18
VPS13CQ709C8 AC009908.1-201ENST00000523030 412 ntTSL 3 BASIC13.91□□□□□ -0.18
VPS13CQ709C8 YEATS4-202ENST00000548020 1100 ntTSL 2 BASIC13.91□□□□□ -0.18
VPS13CQ709C8 AC018470.1-201ENST00000624790 3129 ntBASIC13.91□□□□□ -0.18
VPS13CQ709C8 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
VPS13CQ709C8 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC13.91□□□□□ -0.18
VPS13CQ709C8 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
VPS13CQ709C8 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC13.91□□□□□ -0.18
VPS13CQ709C8 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC13.91□□□□□ -0.18
VPS13CQ709C8 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
VPS13CQ709C8 RPL37AP1-201ENST00000412502 279 ntBASIC13.91□□□□□ -0.18
VPS13CQ709C8 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
VPS13CQ709C8 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC13.9□□□□□ -0.18
VPS13CQ709C8 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
VPS13CQ709C8 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
VPS13CQ709C8 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
VPS13CQ709C8 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
VPS13CQ709C8 LINC00895-201ENST00000629028 1637 ntBASIC13.9□□□□□ -0.18
VPS13CQ709C8 RETN-202ENST00000381324 249 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
VPS13CQ709C8 AC017116.1-201ENST00000445938 708 ntTSL 3 BASIC13.9□□□□□ -0.18
VPS13CQ709C8 INE1-201ENST00000456273 945 ntBASIC13.9□□□□□ -0.18
VPS13CQ709C8 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC13.9□□□□□ -0.18
VPS13CQ709C8 AC046168.2-201ENST00000560590 875 ntTSL 3 BASIC13.9□□□□□ -0.18
VPS13CQ709C8 WASH4P-201ENST00000564273 1246 ntBASIC13.9□□□□□ -0.18
VPS13CQ709C8 AC129507.3-201ENST00000571512 913 ntTSL 2 BASIC13.9□□□□□ -0.18
VPS13CQ709C8 DDTL-201ENST00000215770 1545 ntAPPRIS P1 TSL 2 BASIC13.9□□□□□ -0.18
VPS13CQ709C8 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
VPS13CQ709C8 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
VPS13CQ709C8 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
VPS13CQ709C8 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
VPS13CQ709C8 AC139713.2-201ENST00000641328 2723 ntBASIC13.9□□□□□ -0.18
VPS13CQ709C8 PRMT2-208ENST00000451211 1878 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
VPS13CQ709C8 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC13.9□□□□□ -0.18
VPS13CQ709C8 AC092053.1-201ENST00000605787 1936 ntBASIC13.9□□□□□ -0.18
VPS13CQ709C8 SDHB-201ENST00000375499 1153 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
VPS13CQ709C8 IDH3B-202ENST00000380851 1230 ntAPPRIS ALT1 TSL 1 (best) BASIC13.9□□□□□ -0.18
VPS13CQ709C8 AC092910.3-202ENST00000469070 982 ntTSL 3 BASIC13.9□□□□□ -0.18
VPS13CQ709C8 AC120498.3-201ENST00000568884 542 ntTSL 4 BASIC13.9□□□□□ -0.18
VPS13CQ709C8 AL031717.1-201ENST00000569670 565 ntTSL 4 BASIC13.9□□□□□ -0.18
VPS13CQ709C8 TMEM205-208ENST00000587948 688 ntAPPRIS P1 TSL 5 BASIC13.9□□□□□ -0.18
VPS13CQ709C8 TMEM205-211ENST00000589555 788 ntAPPRIS P1 TSL 2 BASIC13.9□□□□□ -0.18
VPS13CQ709C8 AC026803.2-201ENST00000599784 819 ntTSL 3 BASIC13.9□□□□□ -0.18
VPS13CQ709C8 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
VPS13CQ709C8 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
VPS13CQ709C8 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC13.9□□□□□ -0.18
VPS13CQ709C8 GSKIP-201ENST00000438650 2140 ntAPPRIS P1 TSL 2 BASIC13.9□□□□□ -0.18
VPS13CQ709C8 DMKN-204ENST00000408915 600 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.19
VPS13CQ709C8 THPO-202ENST00000421442 1132 ntTSL 1 (best) BASIC13.9□□□□□ -0.19
VPS13CQ709C8 IL32-206ENST00000440815 920 ntAPPRIS P4 TSL 2 BASIC13.9□□□□□ -0.19
VPS13CQ709C8 IL32-207ENST00000444393 892 ntAPPRIS P4 TSL 2 BASIC13.9□□□□□ -0.19
VPS13CQ709C8 IL32-219ENST00000531965 746 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.19
VPS13CQ709C8 IL32-226ENST00000548476 1014 ntAPPRIS ALT2 TSL 2 BASIC13.9□□□□□ -0.19
VPS13CQ709C8 AL928654.4-206ENST00000551180 980 ntAPPRIS ALT2 TSL 5 BASIC13.9□□□□□ -0.19
VPS13CQ709C8 MALAT1-211ENST00000617791 394 ntTSL 5 BASIC13.9□□□□□ -0.19
VPS13CQ709C8 CLPTM1L-216ENST00000630539 2032 ntTSL 5 BASIC13.9□□□□□ -0.19
VPS13CQ709C8 KLC1-202ENST00000334553 2524 ntTSL 5 BASIC13.89□□□□□ -0.19
VPS13CQ709C8 RPS28-203ENST00000600659 1326 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
VPS13CQ709C8 AC018665.1-201ENST00000622927 1362 ntBASIC13.89□□□□□ -0.19
VPS13CQ709C8 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC13.89□□□□□ -0.19
VPS13CQ709C8 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC13.89□□□□□ -0.19
VPS13CQ709C8 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC13.89□□□□□ -0.19
VPS13CQ709C8 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
VPS13CQ709C8 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
VPS13CQ709C8 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC13.89□□□□□ -0.19
VPS13CQ709C8 KRTAP10-1-201ENST00000400375 1215 ntAPPRIS P1 BASIC13.89□□□□□ -0.19
VPS13CQ709C8 AC093904.2-201ENST00000495580 418 ntTSL 3 BASIC13.89□□□□□ -0.19
VPS13CQ709C8 LITAF-210ENST00000571976 548 ntTSL 2 BASIC13.89□□□□□ -0.19
VPS13CQ709C8 LITAF-214ENST00000574703 486 ntTSL 2 BASIC13.89□□□□□ -0.19
VPS13CQ709C8 AL844908.2-201ENST00000609461 460 ntBASIC13.89□□□□□ -0.19
VPS13CQ709C8 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
VPS13CQ709C8 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
VPS13CQ709C8 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
VPS13CQ709C8 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
VPS13CQ709C8 SLC7A15P-201ENST00000424028 1363 ntBASIC13.89□□□□□ -0.19
VPS13CQ709C8 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
VPS13CQ709C8 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
VPS13CQ709C8 DARS-201ENST00000264161 2361 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
VPS13CQ709C8 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
VPS13CQ709C8 AKIP1-202ENST00000309357 1232 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
VPS13CQ709C8 SLC18B1-202ENST00000367918 472 ntTSL 5 BASIC13.89□□□□□ -0.19
VPS13CQ709C8 ING1-204ENST00000375775 1074 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 41.2 ms