Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 DPYSL3-202ENST00000398514 5309 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CCDC144BQ3MJ40 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
CCDC144BQ3MJ40 PLBD2-201ENST00000280800 4800 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CCDC144BQ3MJ40 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC19.65■□□□□ 0.74
CCDC144BQ3MJ40 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CCDC144BQ3MJ40 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC19.65■□□□□ 0.74
CCDC144BQ3MJ40 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC19.65■□□□□ 0.74
CCDC144BQ3MJ40 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC19.65■□□□□ 0.74
CCDC144BQ3MJ40 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CCDC144BQ3MJ40 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
CCDC144BQ3MJ40 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC19.65■□□□□ 0.74
CCDC144BQ3MJ40 NPRL3-201ENST00000399953 2784 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
CCDC144BQ3MJ40 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
CCDC144BQ3MJ40 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC19.65■□□□□ 0.74
CCDC144BQ3MJ40 IQCF3-204ENST00000446775 1241 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CCDC144BQ3MJ40 KIAA0930-215ENST00000496226 589 ntTSL 5 BASIC19.65■□□□□ 0.74
CCDC144BQ3MJ40 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC19.65■□□□□ 0.74
CCDC144BQ3MJ40 GGTLC5P-201ENST00000617623 998 ntBASIC19.65■□□□□ 0.74
CCDC144BQ3MJ40 AQP6-205ENST00000618286 829 ntTSL 5 BASIC19.65■□□□□ 0.74
CCDC144BQ3MJ40 BCAR1-209ENST00000546196 1340 ntBASIC19.65■□□□□ 0.74
CCDC144BQ3MJ40 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
CCDC144BQ3MJ40 SLC39A8-201ENST00000356736 3144 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CCDC144BQ3MJ40 CES3-203ENST00000543856 3178 ntTSL 2 BASIC19.65■□□□□ 0.74
CCDC144BQ3MJ40 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CCDC144BQ3MJ40 PC-214ENST00000628663 1470 ntTSL 5 BASIC19.65■□□□□ 0.74
CCDC144BQ3MJ40 DOC2GP-204ENST00000639052 2548 ntBASIC19.65■□□□□ 0.74
CCDC144BQ3MJ40 SRSF12-201ENST00000452027 3599 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CCDC144BQ3MJ40 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CCDC144BQ3MJ40 KLHDC8A-205ENST00000539253 2931 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
CCDC144BQ3MJ40 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC19.65■□□□□ 0.74
CCDC144BQ3MJ40 SLC4A5-203ENST00000377632 3123 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
CCDC144BQ3MJ40 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CCDC144BQ3MJ40 OGG1-206ENST00000349503 1950 ntTSL 5 BASIC19.64■□□□□ 0.74
CCDC144BQ3MJ40 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC19.64■□□□□ 0.74
CCDC144BQ3MJ40 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC19.64■□□□□ 0.74
CCDC144BQ3MJ40 ADAM11-203ENST00000535346 2529 ntTSL 2 BASIC19.64■□□□□ 0.74
CCDC144BQ3MJ40 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CCDC144BQ3MJ40 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC19.64■□□□□ 0.73
CCDC144BQ3MJ40 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CCDC144BQ3MJ40 RFPL4AP1-201ENST00000530883 850 ntBASIC19.64■□□□□ 0.73
CCDC144BQ3MJ40 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC19.64■□□□□ 0.73
CCDC144BQ3MJ40 KRT19P2-202ENST00000557173 1012 ntBASIC19.64■□□□□ 0.73
CCDC144BQ3MJ40 AL031432.2-201ENST00000566714 459 ntBASIC19.64■□□□□ 0.73
CCDC144BQ3MJ40 AL928711.1-201ENST00000570165 459 ntBASIC19.64■□□□□ 0.73
CCDC144BQ3MJ40 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC19.64■□□□□ 0.73
CCDC144BQ3MJ40 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC19.64■□□□□ 0.73
CCDC144BQ3MJ40 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC19.64■□□□□ 0.73
CCDC144BQ3MJ40 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
CCDC144BQ3MJ40 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.73
CCDC144BQ3MJ40 HAUS8-201ENST00000253669 1568 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.73
CCDC144BQ3MJ40 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC19.64■□□□□ 0.73
CCDC144BQ3MJ40 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC19.64■□□□□ 0.73
CCDC144BQ3MJ40 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
CCDC144BQ3MJ40 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
CCDC144BQ3MJ40 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
CCDC144BQ3MJ40 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
CCDC144BQ3MJ40 AMOTL2-211ENST00000513145 2653 ntAPPRIS ALT1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CCDC144BQ3MJ40 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CCDC144BQ3MJ40 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC19.64■□□□□ 0.73
CCDC144BQ3MJ40 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC19.63■□□□□ 0.73
CCDC144BQ3MJ40 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CCDC144BQ3MJ40 AL162727.3-201ENST00000635661 2787 ntBASIC19.63■□□□□ 0.73
CCDC144BQ3MJ40 LTF-203ENST00000426532 2494 ntTSL 2 BASIC19.63■□□□□ 0.73
CCDC144BQ3MJ40 GAS7-213ENST00000580865 2417 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
CCDC144BQ3MJ40 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
CCDC144BQ3MJ40 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
CCDC144BQ3MJ40 GCGR-201ENST00000400723 2051 ntAPPRIS P2 TSL 1 (best) BASIC19.63■□□□□ 0.73
CCDC144BQ3MJ40 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC19.63■□□□□ 0.73
CCDC144BQ3MJ40 PON3-203ENST00000427422 894 ntTSL 3 BASIC19.63■□□□□ 0.73
CCDC144BQ3MJ40 RHOQP3-201ENST00000437982 621 ntBASIC19.63■□□□□ 0.73
CCDC144BQ3MJ40 CYMP-203ENST00000474680 1263 ntBASIC19.63■□□□□ 0.73
CCDC144BQ3MJ40 AC068594.1-203ENST00000581153 695 ntTSL 2 BASIC19.63■□□□□ 0.73
CCDC144BQ3MJ40 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC19.63■□□□□ 0.73
CCDC144BQ3MJ40 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC19.63■□□□□ 0.73
CCDC144BQ3MJ40 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CCDC144BQ3MJ40 PDE4C-201ENST00000262805 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
CCDC144BQ3MJ40 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC19.63■□□□□ 0.73
CCDC144BQ3MJ40 FBXL16-202ENST00000397621 3547 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
CCDC144BQ3MJ40 ZNF710-201ENST00000268154 4617 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
CCDC144BQ3MJ40 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC19.63■□□□□ 0.73
CCDC144BQ3MJ40 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC19.62■□□□□ 0.73
CCDC144BQ3MJ40 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC19.62■□□□□ 0.73
CCDC144BQ3MJ40 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
CCDC144BQ3MJ40 SBSPON-201ENST00000297354 3801 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CCDC144BQ3MJ40 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC19.62■□□□□ 0.73
CCDC144BQ3MJ40 NSFL1C-201ENST00000216879 3568 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CCDC144BQ3MJ40 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
CCDC144BQ3MJ40 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CCDC144BQ3MJ40 COQ10A-202ENST00000433805 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
CCDC144BQ3MJ40 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
CCDC144BQ3MJ40 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC19.62■□□□□ 0.73
CCDC144BQ3MJ40 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
CCDC144BQ3MJ40 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
CCDC144BQ3MJ40 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CCDC144BQ3MJ40 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CCDC144BQ3MJ40 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC19.62■□□□□ 0.73
CCDC144BQ3MJ40 METTL21A-202ENST00000406927 1103 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CCDC144BQ3MJ40 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC19.62■□□□□ 0.73
CCDC144BQ3MJ40 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC19.62■□□□□ 0.73
CCDC144BQ3MJ40 AC002558.1-201ENST00000488906 803 ntBASIC19.62■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 32.8 ms