Protein–RNA interactions for Protein: Q06546

GABPA, GA-binding protein alpha chain, humanhuman

Predictions only

Length 454 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
GABPAQ06546 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
GABPAQ06546 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
GABPAQ06546 AL671710.1-201ENST00000610245 2349 ntBASIC19.73■□□□□ 0.75
GABPAQ06546 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC19.73■□□□□ 0.75
GABPAQ06546 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
GABPAQ06546 MAPK15-202ENST00000395107 834 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
GABPAQ06546 RPL30-202ENST00000396070 440 ntTSL 2 BASIC19.73■□□□□ 0.75
GABPAQ06546 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC19.73■□□□□ 0.75
GABPAQ06546 SPDYE14P-201ENST00000442619 822 ntBASIC19.73■□□□□ 0.75
GABPAQ06546 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC19.73■□□□□ 0.75
GABPAQ06546 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC19.73■□□□□ 0.75
GABPAQ06546 AL138918.1-201ENST00000568306 659 ntBASIC19.73■□□□□ 0.75
GABPAQ06546 SIGLEC29P-201ENST00000599873 1114 ntBASIC19.73■□□□□ 0.75
GABPAQ06546 AC093512.1-201ENST00000617969 520 ntBASIC19.73■□□□□ 0.75
GABPAQ06546 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC19.73■□□□□ 0.75
GABPAQ06546 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
GABPAQ06546 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
GABPAQ06546 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
GABPAQ06546 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC19.72■□□□□ 0.75
GABPAQ06546 PILRB-208ENST00000452089 2099 ntAPPRIS P2 TSL 2 BASIC19.72■□□□□ 0.75
GABPAQ06546 RNF169-201ENST00000299563 7823 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
GABPAQ06546 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
GABPAQ06546 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
GABPAQ06546 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC19.72■□□□□ 0.75
GABPAQ06546 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
GABPAQ06546 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
GABPAQ06546 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC19.72■□□□□ 0.75
GABPAQ06546 MAGI3-201ENST00000307546 6430 ntTSL 5 BASIC19.72■□□□□ 0.75
GABPAQ06546 SNHG11-201ENST00000359074 1031 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
GABPAQ06546 ARHGAP11B-201ENST00000428041 1017 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
GABPAQ06546 PRRT3-AS1-201ENST00000431558 614 ntTSL 2 BASIC19.72■□□□□ 0.75
GABPAQ06546 STARD13-205ENST00000439831 945 ntTSL 2 BASIC19.72■□□□□ 0.75
GABPAQ06546 IL32-206ENST00000440815 920 ntAPPRIS P4 TSL 2 BASIC19.72■□□□□ 0.75
GABPAQ06546 IL32-207ENST00000444393 892 ntAPPRIS P4 TSL 2 BASIC19.72■□□□□ 0.75
GABPAQ06546 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC19.72■□□□□ 0.75
GABPAQ06546 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC19.72■□□□□ 0.75
GABPAQ06546 IGHV3-62-201ENST00000520057 340 ntBASIC19.72■□□□□ 0.75
GABPAQ06546 IL32-219ENST00000531965 746 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
GABPAQ06546 SLC25A39P2-201ENST00000537614 270 ntBASIC19.72■□□□□ 0.75
GABPAQ06546 IL32-226ENST00000548476 1014 ntAPPRIS ALT2 TSL 2 BASIC19.72■□□□□ 0.75
GABPAQ06546 VPS29-207ENST00000549970 818 ntTSL 3 BASIC19.72■□□□□ 0.75
GABPAQ06546 AC051619.7-201ENST00000568314 623 ntBASIC19.72■□□□□ 0.75
GABPAQ06546 AC027307.2-201ENST00000591252 911 ntBASIC19.72■□□□□ 0.75
GABPAQ06546 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC19.72■□□□□ 0.75
GABPAQ06546 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC19.72■□□□□ 0.75
GABPAQ06546 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
GABPAQ06546 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.75
GABPAQ06546 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC19.72■□□□□ 0.75
GABPAQ06546 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
GABPAQ06546 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC19.72■□□□□ 0.75
GABPAQ06546 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
GABPAQ06546 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC19.71■□□□□ 0.75
GABPAQ06546 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC19.71■□□□□ 0.75
GABPAQ06546 PHF12-205ENST00000577226 7679 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
GABPAQ06546 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC19.71■□□□□ 0.75
GABPAQ06546 CLEC17A-202ENST00000417570 1399 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
GABPAQ06546 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
GABPAQ06546 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
GABPAQ06546 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC19.71■□□□□ 0.75
GABPAQ06546 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC19.71■□□□□ 0.75
GABPAQ06546 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
GABPAQ06546 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
GABPAQ06546 AP005329.2-201ENST00000580139 1771 ntTSL 2 BASIC19.71■□□□□ 0.75
GABPAQ06546 TPM2-201ENST00000329305 1018 ntAPPRIS ALT1 TSL 2 BASIC19.71■□□□□ 0.75
GABPAQ06546 CD99-202ENST00000381180 530 ntTSL 2 BASIC19.71■□□□□ 0.75
GABPAQ06546 AMACR-202ENST00000382068 862 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
GABPAQ06546 MIR770-201ENST00000390219 98 ntBASIC19.71■□□□□ 0.75
GABPAQ06546 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC19.71■□□□□ 0.75
GABPAQ06546 AL451069.2-201ENST00000428814 297 ntTSL 3 BASIC19.71■□□□□ 0.75
GABPAQ06546 RBPMS2P1-201ENST00000437762 623 ntBASIC19.71■□□□□ 0.75
GABPAQ06546 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC19.71■□□□□ 0.75
GABPAQ06546 LAMTOR4-206ENST00000473459 720 ntTSL 2 BASIC19.71■□□□□ 0.75
GABPAQ06546 AC069262.1-201ENST00000539058 672 ntBASIC19.71■□□□□ 0.75
GABPAQ06546 WDR25-203ENST00000542471 1214 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
GABPAQ06546 AC026150.2-201ENST00000564693 1156 ntBASIC19.71■□□□□ 0.75
GABPAQ06546 AL390955.2-201ENST00000603032 514 ntBASIC19.71■□□□□ 0.75
GABPAQ06546 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC19.71■□□□□ 0.75
GABPAQ06546 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
GABPAQ06546 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC19.71■□□□□ 0.75
GABPAQ06546 SCLT1-205ENST00000503401 1604 ntAPPRIS ALT2 TSL 3 BASIC19.71■□□□□ 0.75
GABPAQ06546 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
GABPAQ06546 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
GABPAQ06546 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC19.71■□□□□ 0.75
GABPAQ06546 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC19.71■□□□□ 0.75
GABPAQ06546 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
GABPAQ06546 AGFG1-201ENST00000310078 8668 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
GABPAQ06546 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
GABPAQ06546 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
GABPAQ06546 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
GABPAQ06546 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC19.7■□□□□ 0.74
GABPAQ06546 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
GABPAQ06546 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC19.7■□□□□ 0.74
GABPAQ06546 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
GABPAQ06546 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
GABPAQ06546 SERPINB6-201ENST00000335686 1604 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
GABPAQ06546 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
GABPAQ06546 ORMDL1-203ENST00000392350 2009 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
GABPAQ06546 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC19.7■□□□□ 0.74
GABPAQ06546 NKG7-201ENST00000221978 843 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
GABPAQ06546 C16orf92-201ENST00000300575 895 ntAPPRIS P2 TSL 1 (best) BASIC19.7■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 25.6 ms