Protein–RNA interactions for Protein: P58304

VSX2, Visual system homeobox 2, humanhuman

Predicted RBP Predictions only

Length 361 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX2P58304 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
VSX2P58304 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
VSX2P58304 PC-214ENST00000628663 1470 ntTSL 5 BASIC16.2■□□□□ 0.18
VSX2P58304 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC16.2■□□□□ 0.18
VSX2P58304 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
VSX2P58304 SOCS7-201ENST00000612932 7857 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
VSX2P58304 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
VSX2P58304 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
VSX2P58304 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
VSX2P58304 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC16.2■□□□□ 0.18
VSX2P58304 DCP1B-201ENST00000280665 2086 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
VSX2P58304 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
VSX2P58304 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
VSX2P58304 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC16.2■□□□□ 0.18
VSX2P58304 WNK2-201ENST00000297954 7138 ntAPPRIS P2 TSL 1 (best) BASIC16.2■□□□□ 0.18
VSX2P58304 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
VSX2P58304 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC16.2■□□□□ 0.18
VSX2P58304 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
VSX2P58304 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
VSX2P58304 MAP4K4-205ENST00000350878 7640 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
VSX2P58304 DPEP1-203ENST00000421184 1647 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
VSX2P58304 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC16.19■□□□□ 0.18
VSX2P58304 TEX19-201ENST00000333437 1936 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
VSX2P58304 MAP3K9-206ENST00000555993 4449 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
VSX2P58304 ARID1A-205ENST00000457599 6268 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
VSX2P58304 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
VSX2P58304 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
VSX2P58304 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
VSX2P58304 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
VSX2P58304 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC16.19■□□□□ 0.18
VSX2P58304 FOS-208ENST00000555686 1496 ntTSL 2 BASIC16.19■□□□□ 0.18
VSX2P58304 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
VSX2P58304 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC16.19■□□□□ 0.18
VSX2P58304 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC16.19■□□□□ 0.18
VSX2P58304 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
VSX2P58304 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
VSX2P58304 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
VSX2P58304 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
VSX2P58304 HNRNPA1P28-201ENST00000424481 961 ntBASIC16.19■□□□□ 0.18
VSX2P58304 COX10-202ENST00000429152 875 ntTSL 2 BASIC16.19■□□□□ 0.18
VSX2P58304 RHOQP3-201ENST00000437982 621 ntBASIC16.19■□□□□ 0.18
VSX2P58304 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC16.19■□□□□ 0.18
VSX2P58304 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC16.19■□□□□ 0.18
VSX2P58304 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
VSX2P58304 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC16.19■□□□□ 0.18
VSX2P58304 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC16.19■□□□□ 0.18
VSX2P58304 HAGH-208ENST00000566709 1291 ntTSL 5 BASIC16.19■□□□□ 0.18
VSX2P58304 DCTPP1-203ENST00000567983 801 ntTSL 5 BASIC16.19■□□□□ 0.18
VSX2P58304 AC023141.13-201ENST00000604991 943 ntBASIC16.19■□□□□ 0.18
VSX2P58304 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC16.19■□□□□ 0.18
VSX2P58304 REXO1L3P-201ENST00000622202 1288 ntBASIC16.19■□□□□ 0.18
VSX2P58304 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC16.19■□□□□ 0.18
VSX2P58304 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
VSX2P58304 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC16.19■□□□□ 0.18
VSX2P58304 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
VSX2P58304 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC16.19■□□□□ 0.18
VSX2P58304 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
VSX2P58304 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
VSX2P58304 AC025580.3-201ENST00000617932 1424 ntBASIC16.19■□□□□ 0.18
VSX2P58304 TBC1D2B-201ENST00000300584 6067 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
VSX2P58304 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
VSX2P58304 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC16.18■□□□□ 0.18
VSX2P58304 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC16.18■□□□□ 0.18
VSX2P58304 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC16.18■□□□□ 0.18
VSX2P58304 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC16.18■□□□□ 0.18
VSX2P58304 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
VSX2P58304 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
VSX2P58304 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC16.18■□□□□ 0.18
VSX2P58304 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC16.18■□□□□ 0.18
VSX2P58304 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
VSX2P58304 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
VSX2P58304 AL021920.2-201ENST00000624828 1351 ntBASIC16.18■□□□□ 0.18
VSX2P58304 STOX1-201ENST00000298596 3377 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
VSX2P58304 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
VSX2P58304 SFTPC-201ENST00000318561 997 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
VSX2P58304 PMP22-202ENST00000395936 816 ntTSL 3 BASIC16.18■□□□□ 0.18
VSX2P58304 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC16.18■□□□□ 0.18
VSX2P58304 KRT18P13-201ENST00000400056 1290 ntBASIC16.18■□□□□ 0.18
VSX2P58304 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
VSX2P58304 EEF1E1-205ENST00000507463 654 ntTSL 2 BASIC16.18■□□□□ 0.18
VSX2P58304 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC16.18■□□□□ 0.18
VSX2P58304 KRT19P2-202ENST00000557173 1012 ntBASIC16.18■□□□□ 0.18
VSX2P58304 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
VSX2P58304 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC16.18■□□□□ 0.18
VSX2P58304 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC16.18■□□□□ 0.18
VSX2P58304 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
VSX2P58304 C2CD3-213ENST00000539061 2722 ntTSL 2 BASIC16.18■□□□□ 0.18
VSX2P58304 ELOVL7-205ENST00000508821 3994 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
VSX2P58304 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
VSX2P58304 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC16.18■□□□□ 0.18
VSX2P58304 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
VSX2P58304 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
VSX2P58304 DTX2-201ENST00000324432 2769 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
VSX2P58304 CD72-211ENST00000612238 1424 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
VSX2P58304 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
VSX2P58304 PLCD3-212ENST00000619929 6107 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
VSX2P58304 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
VSX2P58304 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
VSX2P58304 AC092068.3-201ENST00000587894 2016 ntBASIC16.18■□□□□ 0.18
VSX2P58304 RASSF8-AS1-202ENST00000500276 2610 ntTSL 2 BASIC16.17■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 29.5 ms