Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC14.95□□□□□ -0.02
SOX2P48431 MAPKAP1-202ENST00000350766 3256 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
SOX2P48431 MINDY1-201ENST00000312210 2400 ntTSL 2 BASIC14.95□□□□□ -0.02
SOX2P48431 GCK-202ENST00000345378 2421 ntTSL 2 BASIC14.95□□□□□ -0.02
SOX2P48431 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC14.95□□□□□ -0.02
SOX2P48431 SLC25A45-202ENST00000398802 2286 ntAPPRIS P1 TSL 5 BASIC14.95□□□□□ -0.02
SOX2P48431 FLJ31104-201ENST00000500093 2289 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
SOX2P48431 BTN1A1-202ENST00000613186 2266 ntTSL 2 BASIC14.95□□□□□ -0.02
SOX2P48431 RBPJ-205ENST00000355476 5990 ntAPPRIS P3 TSL 1 (best) BASIC14.95□□□□□ -0.02
SOX2P48431 KCTD7-206ENST00000639828 5951 ntAPPRIS P3 TSL 2 BASIC14.95□□□□□ -0.02
SOX2P48431 ZNF276-201ENST00000289816 4589 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
SOX2P48431 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC14.95□□□□□ -0.02
SOX2P48431 AC073508.3-201ENST00000619697 1419 ntBASIC14.95□□□□□ -0.02
SOX2P48431 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
SOX2P48431 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
SOX2P48431 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
SOX2P48431 RN7SL606P-201ENST00000472779 293 ntBASIC14.95□□□□□ -0.02
SOX2P48431 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
SOX2P48431 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC14.95□□□□□ -0.02
SOX2P48431 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC14.95□□□□□ -0.02
SOX2P48431 CD320-202ENST00000537716 1119 ntTSL 2 BASIC14.95□□□□□ -0.02
SOX2P48431 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC14.95□□□□□ -0.02
SOX2P48431 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC14.95□□□□□ -0.02
SOX2P48431 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC14.95□□□□□ -0.02
SOX2P48431 AC011840.4-201ENST00000578471 627 ntBASIC14.95□□□□□ -0.02
SOX2P48431 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC14.95□□□□□ -0.02
SOX2P48431 ALPPL2-201ENST00000295453 2493 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
SOX2P48431 C20orf166-AS1-201ENST00000412495 2302 ntTSL 2 BASIC14.95□□□□□ -0.02
SOX2P48431 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC14.95□□□□□ -0.02
SOX2P48431 HACE1-201ENST00000262903 4576 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
SOX2P48431 PURB-201ENST00000395699 9069 ntAPPRIS P1 BASIC14.95□□□□□ -0.02
SOX2P48431 WDR81-206ENST00000446363 2968 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
SOX2P48431 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
SOX2P48431 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC14.95□□□□□ -0.02
SOX2P48431 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
SOX2P48431 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
SOX2P48431 HDAC5-202ENST00000336057 5040 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
SOX2P48431 AP001781.3-201ENST00000622211 2939 ntAPPRIS P1 TSL 2 BASIC14.95□□□□□ -0.02
SOX2P48431 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
SOX2P48431 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
SOX2P48431 SPOCK1-202ENST00000394945 4846 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
SOX2P48431 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
SOX2P48431 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC14.95□□□□□ -0.02
SOX2P48431 SLC4A2-214ENST00000485713 4925 ntAPPRIS P3 TSL 1 (best) BASIC14.95□□□□□ -0.02
SOX2P48431 KCNS1-201ENST00000306117 4538 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
SOX2P48431 TM9SF1-201ENST00000261789 2452 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
SOX2P48431 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC14.94□□□□□ -0.02
SOX2P48431 MYH14-204ENST00000440075 4247 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
SOX2P48431 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
SOX2P48431 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC14.94□□□□□ -0.02
SOX2P48431 FAM109A-203ENST00000547838 2846 ntAPPRIS P3 TSL 4 BASIC14.94□□□□□ -0.02
SOX2P48431 HELZ2-202ENST00000427522 7827 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
SOX2P48431 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC14.94□□□□□ -0.02
SOX2P48431 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
SOX2P48431 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
SOX2P48431 VOPP1-207ENST00000428648 2866 ntTSL 2 BASIC14.94□□□□□ -0.02
SOX2P48431 GPER1-202ENST00000397088 2639 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
SOX2P48431 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC14.94□□□□□ -0.02
SOX2P48431 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC14.94□□□□□ -0.02
SOX2P48431 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC14.94□□□□□ -0.02
SOX2P48431 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
SOX2P48431 TSPY22P-201ENST00000427496 604 ntBASIC14.94□□□□□ -0.02
SOX2P48431 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
SOX2P48431 NKTR-203ENST00000442970 646 ntTSL 2 BASIC14.94□□□□□ -0.02
SOX2P48431 MOGAT1-201ENST00000446656 1048 ntAPPRIS P1 TSL 5 BASIC14.94□□□□□ -0.02
SOX2P48431 ENDOV-205ENST00000518644 625 ntTSL 4 BASIC14.94□□□□□ -0.02
SOX2P48431 CLN6-204ENST00000564752 900 ntTSL 3 BASIC14.94□□□□□ -0.02
SOX2P48431 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC14.94□□□□□ -0.02
SOX2P48431 IGHV3-41-201ENST00000613121 348 ntBASIC14.94□□□□□ -0.02
SOX2P48431 AC006011.2-201ENST00000621313 1158 ntBASIC14.94□□□□□ -0.02
SOX2P48431 C10orf142-202ENST00000623589 1010 ntAPPRIS ALT2 TSL 5 BASIC14.94□□□□□ -0.02
SOX2P48431 AC073912.3-201ENST00000624414 853 ntBASIC14.94□□□□□ -0.02
SOX2P48431 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC14.94□□□□□ -0.02
SOX2P48431 CLN6-214ENST00000636314 442 ntTSL 3 BASIC14.94□□□□□ -0.02
SOX2P48431 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC14.94□□□□□ -0.02
SOX2P48431 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC14.94□□□□□ -0.02
SOX2P48431 PON2-201ENST00000222572 1745 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
SOX2P48431 ZNF713-202ENST00000429591 4339 ntAPPRIS P2 TSL 5 BASIC14.94□□□□□ -0.02
SOX2P48431 AL353593.2-201ENST00000602529 1483 ntBASIC14.94□□□□□ -0.02
SOX2P48431 ELMSAN1-201ENST00000286523 8091 ntAPPRIS P2 TSL 1 (best) BASIC14.94□□□□□ -0.02
SOX2P48431 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
SOX2P48431 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
SOX2P48431 UNC13A-204ENST00000550896 5200 ntAPPRIS ALT2 TSL 5 BASIC14.94□□□□□ -0.02
SOX2P48431 PRMT6-201ENST00000370078 2616 ntAPPRIS P1 BASIC14.94□□□□□ -0.02
SOX2P48431 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
SOX2P48431 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
SOX2P48431 GSK3B-201ENST00000264235 7711 ntAPPRIS ALT1 TSL 1 (best) BASIC14.94□□□□□ -0.02
SOX2P48431 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
SOX2P48431 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
SOX2P48431 TBX4-201ENST00000240335 2470 ntAPPRIS P3 TSL 1 (best) BASIC14.93□□□□□ -0.02
SOX2P48431 NCOA6-206ENST00000612493 4082 ntAPPRIS ALT2 TSL 5 BASIC14.93□□□□□ -0.02
SOX2P48431 NUTM2F-201ENST00000253262 2561 ntAPPRIS P2 TSL 1 (best) BASIC14.93□□□□□ -0.02
SOX2P48431 WDR45B-201ENST00000392325 2587 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
SOX2P48431 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
SOX2P48431 ANTXRL-205ENST00000620264 2206 ntAPPRIS P2 TSL 5 BASIC14.93□□□□□ -0.02
SOX2P48431 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
SOX2P48431 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
SOX2P48431 CARS-203ENST00000397111 2685 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
SOX2P48431 ARVCF-204ENST00000406522 2682 ntTSL 5 BASIC14.93□□□□□ -0.02
SOX2P48431 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC14.93□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 38.2 ms