Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC18.98■□□□□ 0.63
CIITAP33076 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC18.98■□□□□ 0.63
CIITAP33076 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
CIITAP33076 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC18.98■□□□□ 0.63
CIITAP33076 TBX18-206ENST00000606784 1230 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
CIITAP33076 AC139530.3-201ENST00000620344 690 ntBASIC18.98■□□□□ 0.63
CIITAP33076 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CIITAP33076 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
CIITAP33076 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC18.98■□□□□ 0.63
CIITAP33076 BHMT2-205ENST00000521567 1537 ntTSL 2 BASIC18.98■□□□□ 0.63
CIITAP33076 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC18.98■□□□□ 0.63
CIITAP33076 UBE2O-201ENST00000319380 5436 ntAPPRIS P2 TSL 1 (best) BASIC18.98■□□□□ 0.63
CIITAP33076 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
CIITAP33076 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC18.98■□□□□ 0.63
CIITAP33076 KRT8P39-201ENST00000396270 1433 ntBASIC18.98■□□□□ 0.63
CIITAP33076 COQ10A-202ENST00000433805 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
CIITAP33076 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
CIITAP33076 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CIITAP33076 ENC1-201ENST00000302351 5520 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CIITAP33076 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC18.98■□□□□ 0.63
CIITAP33076 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC18.98■□□□□ 0.63
CIITAP33076 AC080080.1-201ENST00000625121 2420 ntBASIC18.98■□□□□ 0.63
CIITAP33076 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CIITAP33076 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CIITAP33076 AL671710.1-201ENST00000610245 2349 ntBASIC18.97■□□□□ 0.63
CIITAP33076 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC18.97■□□□□ 0.63
CIITAP33076 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CIITAP33076 KLK5-203ENST00000593428 1365 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CIITAP33076 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC18.97■□□□□ 0.63
CIITAP33076 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
CIITAP33076 MRGPRD-201ENST00000309106 966 ntAPPRIS P1 BASIC18.97■□□□□ 0.63
CIITAP33076 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
CIITAP33076 MIR1233-2-201ENST00000408138 82 ntBASIC18.97■□□□□ 0.63
CIITAP33076 MIR1233-1-201ENST00000408722 82 ntBASIC18.97■□□□□ 0.63
CIITAP33076 CDK2AP2P3-201ENST00000422476 372 ntBASIC18.97■□□□□ 0.63
CIITAP33076 AKIRIN1-203ENST00000446189 1243 ntTSL 2 BASIC18.97■□□□□ 0.63
CIITAP33076 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
CIITAP33076 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC18.97■□□□□ 0.63
CIITAP33076 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC18.97■□□□□ 0.63
CIITAP33076 LINC01413-201ENST00000564843 772 ntTSL 3 BASIC18.97■□□□□ 0.63
CIITAP33076 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC18.97■□□□□ 0.63
CIITAP33076 PYCR1-207ENST00000577756 1144 ntTSL 2 BASIC18.97■□□□□ 0.63
CIITAP33076 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC18.97■□□□□ 0.63
CIITAP33076 AC007192.2-201ENST00000600364 463 ntTSL 5 BASIC18.97■□□□□ 0.63
CIITAP33076 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
CIITAP33076 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
CIITAP33076 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
CIITAP33076 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CIITAP33076 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC18.97■□□□□ 0.63
CIITAP33076 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
CIITAP33076 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC18.97■□□□□ 0.63
CIITAP33076 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC18.97■□□□□ 0.63
CIITAP33076 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CIITAP33076 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC18.97■□□□□ 0.63
CIITAP33076 MGLL-204ENST00000434178 4941 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CIITAP33076 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
CIITAP33076 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC18.97■□□□□ 0.63
CIITAP33076 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC18.97■□□□□ 0.63
CIITAP33076 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC18.96■□□□□ 0.63
CIITAP33076 CACNA1A-225ENST00000636389 8137 ntAPPRIS ALT2 TSL 5 BASIC18.96■□□□□ 0.63
CIITAP33076 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
CIITAP33076 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC18.96■□□□□ 0.63
CIITAP33076 HYAL3-201ENST00000336307 1942 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CIITAP33076 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC18.96■□□□□ 0.63
CIITAP33076 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC18.96■□□□□ 0.63
CIITAP33076 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC18.96■□□□□ 0.63
CIITAP33076 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CIITAP33076 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
CIITAP33076 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CIITAP33076 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CIITAP33076 ANAPC11-201ENST00000344877 918 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CIITAP33076 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC18.96■□□□□ 0.63
CIITAP33076 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC18.96■□□□□ 0.63
CIITAP33076 WDR53-204ENST00000433160 887 ntTSL 5 BASIC18.96■□□□□ 0.63
CIITAP33076 STARD13-205ENST00000439831 945 ntTSL 2 BASIC18.96■□□□□ 0.63
CIITAP33076 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
CIITAP33076 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC18.96■□□□□ 0.63
CIITAP33076 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC18.96■□□□□ 0.63
CIITAP33076 OR10S1-201ENST00000531945 1121 ntAPPRIS P2 BASIC18.96■□□□□ 0.63
CIITAP33076 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC18.96■□□□□ 0.63
CIITAP33076 IGHV3OR16-6-201ENST00000568775 360 ntBASIC18.96■□□□□ 0.63
CIITAP33076 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC18.96■□□□□ 0.63
CIITAP33076 MIR4469-201ENST00000583919 79 ntBASIC18.96■□□□□ 0.63
CIITAP33076 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC18.96■□□□□ 0.63
CIITAP33076 GPR42-202ENST00000597214 1182 ntAPPRIS P1 BASIC18.96■□□□□ 0.63
CIITAP33076 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC18.96■□□□□ 0.63
CIITAP33076 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC18.96■□□□□ 0.63
CIITAP33076 OR10S1-202ENST00000641123 1121 ntAPPRIS ALT2 BASIC18.96■□□□□ 0.63
CIITAP33076 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC18.96■□□□□ 0.63
CIITAP33076 AC106820.2-201ENST00000563775 3264 ntBASIC18.96■□□□□ 0.63
CIITAP33076 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
CIITAP33076 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CIITAP33076 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC18.96■□□□□ 0.63
CIITAP33076 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC18.96■□□□□ 0.63
CIITAP33076 TULP2-201ENST00000221399 1754 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CIITAP33076 IL34-202ENST00000429149 1779 ntAPPRIS P2 TSL 5 BASIC18.96■□□□□ 0.63
CIITAP33076 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
CIITAP33076 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC18.95■□□□□ 0.62
CIITAP33076 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CIITAP33076 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC18.95■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 24.5 ms