Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
COL9A1P20849 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
COL9A1P20849 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
COL9A1P20849 C2orf27A-205ENST00000624391 1335 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
COL9A1P20849 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
COL9A1P20849 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC17.26■□□□□ 0.35
COL9A1P20849 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC17.26■□□□□ 0.35
COL9A1P20849 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC17.26■□□□□ 0.35
COL9A1P20849 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
COL9A1P20849 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
COL9A1P20849 EIF4E-201ENST00000280892 1097 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
COL9A1P20849 SMIM29-202ENST00000394990 792 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
COL9A1P20849 AL365277.1-206ENST00000417869 487 ntTSL 3 BASIC17.26■□□□□ 0.35
COL9A1P20849 RPS24-203ENST00000435275 656 ntAPPRIS ALT1 TSL 2 BASIC17.26■□□□□ 0.35
COL9A1P20849 AL365277.1-204ENST00000450157 599 ntTSL 3 BASIC17.26■□□□□ 0.35
COL9A1P20849 AL365277.1-203ENST00000458207 693 ntTSL 3 BASIC17.26■□□□□ 0.35
COL9A1P20849 AC093004.1-201ENST00000508850 424 ntBASIC17.26■□□□□ 0.35
COL9A1P20849 C19orf53-206ENST00000593274 491 ntTSL 2 BASIC17.26■□□□□ 0.35
COL9A1P20849 RPS24-214ENST00000613865 538 ntTSL 5 BASIC17.26■□□□□ 0.35
COL9A1P20849 AL161645.1-201ENST00000622716 1255 ntBASIC17.26■□□□□ 0.35
COL9A1P20849 SFT2D2-204ENST00000630869 1073 ntTSL 4 BASIC17.26■□□□□ 0.35
COL9A1P20849 AC006453.2-202ENST00000635968 827 ntTSL 5 BASIC17.26■□□□□ 0.35
COL9A1P20849 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
COL9A1P20849 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
COL9A1P20849 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
COL9A1P20849 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC17.26■□□□□ 0.35
COL9A1P20849 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
COL9A1P20849 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
COL9A1P20849 RASSF6-202ENST00000335049 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
COL9A1P20849 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC17.26■□□□□ 0.35
COL9A1P20849 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
COL9A1P20849 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
COL9A1P20849 AC012317.2-201ENST00000623305 2251 ntBASIC17.26■□□□□ 0.35
COL9A1P20849 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC17.26■□□□□ 0.35
COL9A1P20849 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
COL9A1P20849 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC17.25■□□□□ 0.35
COL9A1P20849 SERPINB6-201ENST00000335686 1604 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
COL9A1P20849 SARS2-212ENST00000600042 1630 ntTSL 2 BASIC17.25■□□□□ 0.35
COL9A1P20849 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC17.25■□□□□ 0.35
COL9A1P20849 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC17.25■□□□□ 0.35
COL9A1P20849 FUT2-201ENST00000391876 1593 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
COL9A1P20849 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
COL9A1P20849 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
COL9A1P20849 UROS-203ENST00000368786 1216 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
COL9A1P20849 C1orf210-201ENST00000423420 629 ntAPPRIS P1 TSL 3 BASIC17.25■□□□□ 0.35
COL9A1P20849 AC008278.1-201ENST00000431117 568 ntTSL 4 BASIC17.25■□□□□ 0.35
COL9A1P20849 LINC01983-203ENST00000444346 519 ntTSL 2 BASIC17.25■□□□□ 0.35
COL9A1P20849 PAX5-207ENST00000446742 885 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
COL9A1P20849 SYNPR-202ENST00000450542 1004 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
COL9A1P20849 RPS2P36-201ENST00000456516 831 ntBASIC17.25■□□□□ 0.35
COL9A1P20849 AC092691.1-201ENST00000484092 554 ntTSL 4 BASIC17.25■□□□□ 0.35
COL9A1P20849 EEF1E1-205ENST00000507463 654 ntTSL 2 BASIC17.25■□□□□ 0.35
COL9A1P20849 IL32-212ENST00000526464 1198 ntAPPRIS P4 TSL 2 BASIC17.25■□□□□ 0.35
COL9A1P20849 IL32-217ENST00000530538 674 ntAPPRIS P4 TSL 3 BASIC17.25■□□□□ 0.35
COL9A1P20849 AL132639.3-201ENST00000556537 530 ntTSL 4 BASIC17.25■□□□□ 0.35
COL9A1P20849 YIF1B-216ENST00000592694 1181 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
COL9A1P20849 SPCS2P2-201ENST00000603270 608 ntBASIC17.25■□□□□ 0.35
COL9A1P20849 AL365330.1-201ENST00000607459 531 ntBASIC17.25■□□□□ 0.35
COL9A1P20849 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC17.25■□□□□ 0.35
COL9A1P20849 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC17.25■□□□□ 0.35
COL9A1P20849 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
COL9A1P20849 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
COL9A1P20849 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
COL9A1P20849 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
COL9A1P20849 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC17.25■□□□□ 0.35
COL9A1P20849 AL023806.1-201ENST00000603994 1649 ntBASIC17.25■□□□□ 0.35
COL9A1P20849 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
COL9A1P20849 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC17.25■□□□□ 0.35
COL9A1P20849 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC17.25■□□□□ 0.35
COL9A1P20849 LINC02268-202ENST00000515444 1328 ntTSL 2 BASIC17.24■□□□□ 0.35
COL9A1P20849 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
COL9A1P20849 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
COL9A1P20849 OCIAD1-202ENST00000381473 1594 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
COL9A1P20849 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
COL9A1P20849 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC17.24■□□□□ 0.35
COL9A1P20849 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
COL9A1P20849 BORCS8-MEF2B-203ENST00000514819 1406 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
COL9A1P20849 HNRNPRP1-201ENST00000453465 1695 ntBASIC17.24■□□□□ 0.35
COL9A1P20849 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC17.24■□□□□ 0.35
COL9A1P20849 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
COL9A1P20849 FLT3LG-201ENST00000204637 1046 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
COL9A1P20849 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC17.24■□□□□ 0.35
COL9A1P20849 TPSD1-202ENST00000397534 896 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
COL9A1P20849 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC17.24■□□□□ 0.35
COL9A1P20849 FAM3B-203ENST00000398647 864 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
COL9A1P20849 FAM3B-204ENST00000398652 1125 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
COL9A1P20849 Z82214.2-201ENST00000420269 531 ntTSL 4 BASIC17.24■□□□□ 0.35
COL9A1P20849 NUS1P3-201ENST00000423502 862 ntBASIC17.24■□□□□ 0.35
COL9A1P20849 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
COL9A1P20849 AC087294.1-202ENST00000439136 487 ntTSL 3 BASIC17.24■□□□□ 0.35
COL9A1P20849 AC092473.1-201ENST00000441098 221 ntBASIC17.24■□□□□ 0.35
COL9A1P20849 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC17.24■□□□□ 0.35
COL9A1P20849 AC009403.1-204ENST00000469539 597 ntTSL 2 BASIC17.24■□□□□ 0.35
COL9A1P20849 AC024475.1-201ENST00000528480 605 ntTSL 5 BASIC17.24■□□□□ 0.35
COL9A1P20849 AC026495.1-203ENST00000557528 906 ntTSL 5 BASIC17.24■□□□□ 0.35
COL9A1P20849 CCNB2-203ENST00000559622 1064 ntTSL 5 BASIC17.24■□□□□ 0.35
COL9A1P20849 AC087294.1-201ENST00000580291 1152 ntTSL 2 BASIC17.24■□□□□ 0.35
COL9A1P20849 HEXIM2-206ENST00000591576 1176 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
COL9A1P20849 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC17.24■□□□□ 0.35
COL9A1P20849 AL121944.1-201ENST00000605945 686 ntTSL 2 BASIC17.24■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 29.8 ms