Protein–RNA interactions for Protein: P02458

COL2A1, Collagen alpha-1(II) chain, humanhuman

Predicted RBP Predictions only

Length 1,487 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL2A1P02458 C17orf62-201ENST00000306645 2093 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
COL2A1P02458 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC19.51■□□□□ 0.71
COL2A1P02458 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC19.51■□□□□ 0.71
COL2A1P02458 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
COL2A1P02458 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
COL2A1P02458 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
COL2A1P02458 FCRLB-204ENST00000367946 1152 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
COL2A1P02458 RBM3-202ENST00000376755 1130 ntAPPRIS P1 TSL 2 BASIC19.51■□□□□ 0.71
COL2A1P02458 METTL26-204ENST00000397665 558 ntTSL 2 BASIC19.51■□□□□ 0.71
COL2A1P02458 AL669831.5-201ENST00000434264 844 ntTSL 5 BASIC19.51■□□□□ 0.71
COL2A1P02458 LINC02437-201ENST00000505053 911 ntTSL 3 BASIC19.51■□□□□ 0.71
COL2A1P02458 FAM92A-219ENST00000620645 1014 ntAPPRIS ALT2 TSL 5 BASIC19.51■□□□□ 0.71
COL2A1P02458 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC19.51■□□□□ 0.71
COL2A1P02458 HAUS2-211ENST00000639412 375 ntTSL 2 BASIC19.51■□□□□ 0.71
COL2A1P02458 ATP5S-201ENST00000245448 1671 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
COL2A1P02458 LETM2-201ENST00000297720 1693 ntTSL 2 BASIC19.51■□□□□ 0.71
COL2A1P02458 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC19.51■□□□□ 0.71
COL2A1P02458 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
COL2A1P02458 CETN4P-206ENST00000642099 2168 ntBASIC19.51■□□□□ 0.71
COL2A1P02458 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
COL2A1P02458 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC19.51■□□□□ 0.71
COL2A1P02458 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
COL2A1P02458 AL023806.1-201ENST00000603994 1649 ntBASIC19.51■□□□□ 0.71
COL2A1P02458 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC19.51■□□□□ 0.71
COL2A1P02458 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
COL2A1P02458 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
COL2A1P02458 OCIAD1-202ENST00000381473 1594 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
COL2A1P02458 SNRPB-201ENST00000381342 1154 ntAPPRIS ALT1 TSL 1 (best) BASIC19.5■□□□□ 0.71
COL2A1P02458 FAM159B-201ENST00000389074 847 ntAPPRIS P1 TSL 2 BASIC19.5■□□□□ 0.71
COL2A1P02458 AC005034.1-201ENST00000426657 489 ntBASIC19.5■□□□□ 0.71
COL2A1P02458 SNRPB-202ENST00000438552 1008 ntAPPRIS P4 TSL 1 (best) BASIC19.5■□□□□ 0.71
COL2A1P02458 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
COL2A1P02458 AC007274.1-201ENST00000439805 662 ntBASIC19.5■□□□□ 0.71
COL2A1P02458 TMEM176A-202ENST00000461345 635 ntAPPRIS ALT2 TSL 5 BASIC19.5■□□□□ 0.71
COL2A1P02458 UBE2H-204ENST00000473814 535 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
COL2A1P02458 RNA5SP410-201ENST00000516285 106 ntBASIC19.5■□□□□ 0.71
COL2A1P02458 AC005225.4-201ENST00000557330 545 ntBASIC19.5■□□□□ 0.71
COL2A1P02458 AL031717.1-201ENST00000569670 565 ntTSL 4 BASIC19.5■□□□□ 0.71
COL2A1P02458 SPDYE22P-201ENST00000582158 798 ntBASIC19.5■□□□□ 0.71
COL2A1P02458 AC020765.3-201ENST00000613051 740 ntBASIC19.5■□□□□ 0.71
COL2A1P02458 AL512625.3-203ENST00000445604 1602 ntTSL 5 BASIC19.5■□□□□ 0.71
COL2A1P02458 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC19.5■□□□□ 0.71
COL2A1P02458 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC19.5■□□□□ 0.71
COL2A1P02458 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC19.5■□□□□ 0.71
COL2A1P02458 HOXB5-201ENST00000239151 2041 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
COL2A1P02458 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC19.5■□□□□ 0.71
COL2A1P02458 FBXO22-202ENST00000453211 1486 ntTSL 2 BASIC19.49■□□□□ 0.71
COL2A1P02458 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
COL2A1P02458 TDG-209ENST00000544861 1387 ntTSL 2 BASIC19.49■□□□□ 0.71
COL2A1P02458 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
COL2A1P02458 AL512652.2-201ENST00000625156 1716 ntBASIC19.49■□□□□ 0.71
COL2A1P02458 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC19.49■□□□□ 0.71
COL2A1P02458 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
COL2A1P02458 HNRNPA3P1-201ENST00000401429 1139 ntBASIC19.49■□□□□ 0.71
COL2A1P02458 GOLGA6L11P-201ENST00000417252 1298 ntBASIC19.49■□□□□ 0.71
COL2A1P02458 HNRNPA3P5-201ENST00000455201 833 ntBASIC19.49■□□□□ 0.71
COL2A1P02458 AL606760.1-201ENST00000458151 1181 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
COL2A1P02458 AC103957.2-201ENST00000521218 510 ntTSL 2 BASIC19.49■□□□□ 0.71
COL2A1P02458 AC137894.1-201ENST00000526431 547 ntTSL 2 BASIC19.49■□□□□ 0.71
COL2A1P02458 MAPKAPK5-203ENST00000547305 494 ntTSL 2 BASIC19.49■□□□□ 0.71
COL2A1P02458 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC19.49■□□□□ 0.71
COL2A1P02458 MPI-209ENST00000564003 1195 ntTSL 2 BASIC19.49■□□□□ 0.71
COL2A1P02458 DBI-212ENST00000627305 620 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
COL2A1P02458 IER3IP1-202ENST00000639845 832 ntTSL 2 BASIC19.49■□□□□ 0.71
COL2A1P02458 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
COL2A1P02458 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
COL2A1P02458 B3GNT8-201ENST00000321702 1874 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
COL2A1P02458 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
COL2A1P02458 KAT7-213ENST00000510819 1769 ntTSL 2 BASIC19.49■□□□□ 0.71
COL2A1P02458 PANK2-209ENST00000621507 1763 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
COL2A1P02458 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
COL2A1P02458 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
COL2A1P02458 AC087499.5-201ENST00000452760 1342 ntBASIC19.49■□□□□ 0.71
COL2A1P02458 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
COL2A1P02458 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC19.49■□□□□ 0.71
COL2A1P02458 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC19.49■□□□□ 0.71
COL2A1P02458 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
COL2A1P02458 TBX4-201ENST00000240335 2470 ntAPPRIS P3 TSL 1 (best) BASIC19.49■□□□□ 0.71
COL2A1P02458 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
COL2A1P02458 AES-201ENST00000221561 1884 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
COL2A1P02458 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
COL2A1P02458 AL391256.1-201ENST00000443260 1855 ntBASIC19.49■□□□□ 0.71
COL2A1P02458 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC19.49■□□□□ 0.71
COL2A1P02458 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC19.49■□□□□ 0.71
COL2A1P02458 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC19.49■□□□□ 0.71
COL2A1P02458 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
COL2A1P02458 FAM19A3-202ENST00000369630 1282 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
COL2A1P02458 MRNIP-202ENST00000376931 1004 ntAPPRIS ALT2 TSL 2 BASIC19.48■□□□□ 0.71
COL2A1P02458 LINC01160-201ENST00000441004 768 ntTSL 3 BASIC19.48■□□□□ 0.71
COL2A1P02458 TMPRSS11CP-201ENST00000453277 683 ntBASIC19.48■□□□□ 0.71
COL2A1P02458 AC123777.1-201ENST00000534827 1247 ntTSL 3 BASIC19.48■□□□□ 0.71
COL2A1P02458 AC099482.1-201ENST00000563471 481 ntTSL 2 BASIC19.48■□□□□ 0.71
COL2A1P02458 AC013565.3-201ENST00000565547 450 ntTSL 3 BASIC19.48■□□□□ 0.71
COL2A1P02458 COX11-202ENST00000571584 1108 ntTSL 2 BASIC19.48■□□□□ 0.71
COL2A1P02458 RN7SL828P-201ENST00000607615 303 ntBASIC19.48■□□□□ 0.71
COL2A1P02458 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC19.48■□□□□ 0.71
COL2A1P02458 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC19.48■□□□□ 0.71
COL2A1P02458 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC19.48■□□□□ 0.71
COL2A1P02458 PILRB-208ENST00000452089 2099 ntAPPRIS P2 TSL 2 BASIC19.48■□□□□ 0.71
COL2A1P02458 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 26.4 ms