Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
LDLRP01130 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC16.42■□□□□ 0.22
LDLRP01130 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
LDLRP01130 EVC2-202ENST00000344408 4390 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
LDLRP01130 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
LDLRP01130 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC16.42■□□□□ 0.22
LDLRP01130 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
LDLRP01130 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC16.42■□□□□ 0.22
LDLRP01130 S100A16-204ENST00000368706 1118 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
LDLRP01130 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
LDLRP01130 IGHGP-201ENST00000390555 1178 ntBASIC16.42■□□□□ 0.22
LDLRP01130 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC16.42■□□□□ 0.22
LDLRP01130 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
LDLRP01130 GGCT-205ENST00000409436 954 ntTSL 3 BASIC16.42■□□□□ 0.22
LDLRP01130 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
LDLRP01130 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC16.42■□□□□ 0.22
LDLRP01130 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
LDLRP01130 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC16.42■□□□□ 0.22
LDLRP01130 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC16.42■□□□□ 0.22
LDLRP01130 AL355385.1-201ENST00000606123 409 ntBASIC16.42■□□□□ 0.22
LDLRP01130 DGUOK-208ENST00000629438 1029 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
LDLRP01130 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC16.42■□□□□ 0.22
LDLRP01130 MYEF2-215ENST00000610570 2591 ntTSL 5 BASIC16.42■□□□□ 0.22
LDLRP01130 CACNA1A-238ENST00000637276 7135 ntAPPRIS ALT2 TSL 5 BASIC16.42■□□□□ 0.22
LDLRP01130 AC006449.5-201ENST00000610658 2098 ntBASIC16.42■□□□□ 0.22
LDLRP01130 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
LDLRP01130 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
LDLRP01130 TBC1D9B-201ENST00000355235 5119 ntAPPRIS P3 TSL 5 BASIC16.42■□□□□ 0.22
LDLRP01130 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
LDLRP01130 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
LDLRP01130 TRIM72-201ENST00000322122 8500 ntAPPRIS P1 TSL 2 BASIC16.42■□□□□ 0.22
LDLRP01130 CYB561D1-205ENST00000430195 5077 ntTSL 2 BASIC16.42■□□□□ 0.22
LDLRP01130 UNC119B-201ENST00000344651 4404 ntAPPRIS P1 TSL 2 BASIC16.42■□□□□ 0.22
LDLRP01130 IL12RB2-201ENST00000262345 4040 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
LDLRP01130 SLC9A7-201ENST00000328306 3838 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
LDLRP01130 SLC30A1-201ENST00000367001 5474 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
LDLRP01130 ZNF259P1-201ENST00000407656 1365 ntBASIC16.41■□□□□ 0.22
LDLRP01130 ANKRD17-201ENST00000330838 7734 ntAPPRIS ALT2 TSL 2 BASIC16.41■□□□□ 0.22
LDLRP01130 PRKAR2B-201ENST00000265717 3745 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
LDLRP01130 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
LDLRP01130 FRMD6-AS1-201ENST00000617151 2229 ntBASIC16.41■□□□□ 0.22
LDLRP01130 NDRG1-202ENST00000414097 3755 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
LDLRP01130 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
LDLRP01130 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
LDLRP01130 POM121L3P-201ENST00000419331 1163 ntBASIC16.41■□□□□ 0.22
LDLRP01130 C11orf74-203ENST00000446510 1062 ntAPPRIS P3 TSL 5 BASIC16.41■□□□□ 0.22
LDLRP01130 MINOS1P3-201ENST00000457048 203 ntBASIC16.41■□□□□ 0.22
LDLRP01130 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC16.41■□□□□ 0.22
LDLRP01130 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
LDLRP01130 AC073648.2-201ENST00000510116 352 ntBASIC16.41■□□□□ 0.22
LDLRP01130 PELP1-208ENST00000572293 5272 ntAPPRIS P2 TSL 1 (best) BASIC16.41■□□□□ 0.22
LDLRP01130 CNP-201ENST00000393888 2583 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
LDLRP01130 PLPPR2-201ENST00000251473 2727 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
LDLRP01130 SLC25A45-201ENST00000294187 2196 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
LDLRP01130 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
LDLRP01130 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
LDLRP01130 PRMT6-201ENST00000370078 2616 ntAPPRIS P1 BASIC16.41■□□□□ 0.22
LDLRP01130 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
LDLRP01130 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
LDLRP01130 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC16.41■□□□□ 0.22
LDLRP01130 CHST14-201ENST00000306243 3574 ntAPPRIS P1 BASIC16.41■□□□□ 0.22
LDLRP01130 ACTN2-207ENST00000546208 5103 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
LDLRP01130 PURB-201ENST00000395699 9069 ntAPPRIS P1 BASIC16.4■□□□□ 0.22
LDLRP01130 STK35-201ENST00000381482 6685 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
LDLRP01130 ZC3H7B-201ENST00000352645 5909 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
LDLRP01130 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
LDLRP01130 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC16.4■□□□□ 0.22
LDLRP01130 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
LDLRP01130 KRT8P47-201ENST00000604727 1398 ntBASIC16.4■□□□□ 0.22
LDLRP01130 COL18A1-203ENST00000359759 6586 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
LDLRP01130 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC16.4■□□□□ 0.22
LDLRP01130 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
LDLRP01130 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC16.4■□□□□ 0.22
LDLRP01130 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
LDLRP01130 ZNF805-201ENST00000354309 2396 ntTSL 5 BASIC16.4■□□□□ 0.22
LDLRP01130 PCDHA12-201ENST00000398631 5233 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
LDLRP01130 EIF4G3-212ENST00000602326 6196 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
LDLRP01130 RBX1-201ENST00000216225 1188 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
LDLRP01130 AC018712.1-201ENST00000455767 687 ntBASIC16.4■□□□□ 0.22
LDLRP01130 AC091607.1-201ENST00000490318 1060 ntBASIC16.4■□□□□ 0.22
LDLRP01130 AC139887.3-201ENST00000568585 713 ntBASIC16.4■□□□□ 0.22
LDLRP01130 NUBP2-214ENST00000568706 913 ntTSL 2 BASIC16.4■□□□□ 0.22
LDLRP01130 LITAF-211ENST00000572255 516 ntTSL 4 BASIC16.4■□□□□ 0.22
LDLRP01130 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC16.4■□□□□ 0.22
LDLRP01130 AL139424.1-201ENST00000607572 797 ntBASIC16.4■□□□□ 0.22
LDLRP01130 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
LDLRP01130 MIR7706-201ENST00000613747 67 ntBASIC16.4■□□□□ 0.22
LDLRP01130 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC16.4■□□□□ 0.22
LDLRP01130 COG5-203ENST00000393603 5418 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
LDLRP01130 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
LDLRP01130 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC16.4■□□□□ 0.22
LDLRP01130 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
LDLRP01130 STK24-203ENST00000397517 4578 ntTSL 2 BASIC16.4■□□□□ 0.22
LDLRP01130 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
LDLRP01130 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC16.4■□□□□ 0.22
LDLRP01130 PLPPR5-202ENST00000370188 4139 ntAPPRIS ALT1 TSL 1 (best) BASIC16.4■□□□□ 0.22
LDLRP01130 PKD1P5-201ENST00000532415 10291 ntBASIC16.4■□□□□ 0.22
LDLRP01130 HDAC5-201ENST00000225983 5326 ntAPPRIS P3 TSL 5 BASIC16.4■□□□□ 0.22
LDLRP01130 OSGEP-201ENST00000206542 2002 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
LDLRP01130 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 40 ms