Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 ST6GALNAC6-216ENST00000622357 2396 ntAPPRIS ALT1 TSL 1 (best) BASIC23.36■■□□□ 1.33
MSH5O43196 LINC00554-201ENST00000564841 3011 ntBASIC23.36■■□□□ 1.33
MSH5O43196 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC23.36■■□□□ 1.33
MSH5O43196 PLAC8-201ENST00000311507 1447 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
MSH5O43196 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
MSH5O43196 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
MSH5O43196 RERGL-201ENST00000229002 1147 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
MSH5O43196 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC23.36■■□□□ 1.33
MSH5O43196 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC23.36■■□□□ 1.33
MSH5O43196 RNU4-86P-201ENST00000410135 219 ntBASIC23.36■■□□□ 1.33
MSH5O43196 PTCD2P2-201ENST00000415579 1095 ntBASIC23.36■■□□□ 1.33
MSH5O43196 RPP40P1-201ENST00000426762 456 ntBASIC23.36■■□□□ 1.33
MSH5O43196 AL591424.1-201ENST00000442569 1213 ntBASIC23.36■■□□□ 1.33
MSH5O43196 AP000534.1-201ENST00000444162 1294 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
MSH5O43196 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC23.36■■□□□ 1.33
MSH5O43196 LINC01377-201ENST00000505396 649 ntTSL 2 BASIC23.36■■□□□ 1.33
MSH5O43196 AC034105.1-201ENST00000563488 319 ntBASIC23.36■■□□□ 1.33
MSH5O43196 RPS15-207ENST00000591032 550 ntTSL 3 BASIC23.36■■□□□ 1.33
MSH5O43196 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
MSH5O43196 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC23.36■■□□□ 1.33
MSH5O43196 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC23.36■■□□□ 1.33
MSH5O43196 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC23.36■■□□□ 1.33
MSH5O43196 PTPN5-202ENST00000396166 2299 ntTSL 2 BASIC23.36■■□□□ 1.33
MSH5O43196 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
MSH5O43196 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
MSH5O43196 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
MSH5O43196 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
MSH5O43196 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
MSH5O43196 LMO3-224ENST00000540848 1574 ntAPPRIS P1 TSL 5 BASIC23.35■■□□□ 1.33
MSH5O43196 LINC02138-201ENST00000378340 1326 ntTSL 2 BASIC23.35■■□□□ 1.33
MSH5O43196 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC23.35■■□□□ 1.33
MSH5O43196 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC23.35■■□□□ 1.33
MSH5O43196 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
MSH5O43196 MPIG6B-204ENST00000375809 2396 ntAPPRIS ALT2 TSL 1 (best) BASIC23.35■■□□□ 1.33
MSH5O43196 FGFR2-215ENST00000457416 3061 ntAPPRIS P3 TSL 1 (best) BASIC23.35■■□□□ 1.33
MSH5O43196 HLA-J-201ENST00000462773 1622 ntBASIC23.35■■□□□ 1.33
MSH5O43196 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
MSH5O43196 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
MSH5O43196 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
MSH5O43196 DPM3-203ENST00000368400 409 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
MSH5O43196 AP000688.3-201ENST00000445464 348 ntTSL 3 BASIC23.35■■□□□ 1.33
MSH5O43196 DNAJB3-201ENST00000446806 729 ntBASIC23.35■■□□□ 1.33
MSH5O43196 AADACP1-203ENST00000471766 707 ntTSL 3 BASIC23.35■■□□□ 1.33
MSH5O43196 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
MSH5O43196 RNU6-362P-201ENST00000516736 90 ntBASIC23.35■■□□□ 1.33
MSH5O43196 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC23.35■■□□□ 1.33
MSH5O43196 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC23.35■■□□□ 1.33
MSH5O43196 AL161912.3-201ENST00000605404 628 ntBASIC23.35■■□□□ 1.33
MSH5O43196 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC23.35■■□□□ 1.33
MSH5O43196 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC23.35■■□□□ 1.33
MSH5O43196 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC23.35■■□□□ 1.33
MSH5O43196 MTND2P41-201ENST00000637599 773 ntBASIC23.35■■□□□ 1.33
MSH5O43196 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC23.35■■□□□ 1.33
MSH5O43196 TTTY7-201ENST00000276770 1367 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
MSH5O43196 TTTY7B-201ENST00000276779 1367 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
MSH5O43196 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC23.35■■□□□ 1.33
MSH5O43196 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC23.35■■□□□ 1.33
MSH5O43196 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC23.35■■□□□ 1.33
MSH5O43196 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
MSH5O43196 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
MSH5O43196 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
MSH5O43196 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC23.35■■□□□ 1.33
MSH5O43196 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC23.35■■□□□ 1.33
MSH5O43196 ANKRD66-202ENST00000565422 1346 ntAPPRIS P1 TSL 2 BASIC23.34■■□□□ 1.33
MSH5O43196 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC23.34■■□□□ 1.33
MSH5O43196 CHAT-205ENST00000395562 2528 ntAPPRIS ALT2 TSL 1 (best) BASIC23.34■■□□□ 1.33
MSH5O43196 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
MSH5O43196 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC23.34■■□□□ 1.33
MSH5O43196 ELAVL2-208ENST00000544538 3789 ntAPPRIS P3 TSL 5 BASIC23.34■■□□□ 1.33
MSH5O43196 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
MSH5O43196 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC23.34■■□□□ 1.33
MSH5O43196 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
MSH5O43196 LIAS-204ENST00000424936 1011 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
MSH5O43196 AC008269.1-201ENST00000438070 646 ntTSL 3 BASIC23.34■■□□□ 1.33
MSH5O43196 RPL6P8-201ENST00000490136 843 ntBASIC23.34■■□□□ 1.33
MSH5O43196 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC23.34■■□□□ 1.33
MSH5O43196 AP003692.1-201ENST00000521706 796 ntTSL 5 BASIC23.34■■□□□ 1.33
MSH5O43196 AC100768.2-201ENST00000534068 683 ntTSL 3 BASIC23.34■■□□□ 1.33
MSH5O43196 MTND3P12-201ENST00000559068 328 ntBASIC23.34■■□□□ 1.33
MSH5O43196 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC23.34■■□□□ 1.33
MSH5O43196 AC021087.4-201ENST00000563761 564 ntBASIC23.34■■□□□ 1.33
MSH5O43196 AC015910.1-202ENST00000580264 633 ntTSL 5 BASIC23.34■■□□□ 1.33
MSH5O43196 AC067959.1-201ENST00000604334 379 ntBASIC23.34■■□□□ 1.33
MSH5O43196 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
MSH5O43196 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
MSH5O43196 PRL-201ENST00000306482 1354 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
MSH5O43196 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC23.34■■□□□ 1.33
MSH5O43196 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC23.34■■□□□ 1.33
MSH5O43196 GLOD4-203ENST00000536578 2497 ntTSL 5 BASIC23.34■■□□□ 1.33
MSH5O43196 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC23.34■■□□□ 1.33
MSH5O43196 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC23.34■■□□□ 1.33
MSH5O43196 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
MSH5O43196 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC23.33■■□□□ 1.33
MSH5O43196 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC23.33■■□□□ 1.33
MSH5O43196 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC23.33■■□□□ 1.33
MSH5O43196 LAD1-201ENST00000367313 2336 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
MSH5O43196 SLC2A14-202ENST00000396589 2335 ntAPPRIS P3 TSL 1 (best) BASIC23.33■■□□□ 1.33
MSH5O43196 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
MSH5O43196 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC23.33■■□□□ 1.33
MSH5O43196 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC23.33■■□□□ 1.33
Retrieved 100 of 98,524 protein–RNA pairs in 66.3 ms