RNA–Protein interactions for RNA: ENST00000540848.5

LMO3-224, Transcript of LIM domain only 3, humanhuman

APPRIS P1 TSL 5 BASIC

Gene LMO3, Length 1,574 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMO3-224ENST00000540848 AEBP2Q6ZN18 517 aaPredicted RBP31.81■■■□□ 2.68
LMO3-224ENST00000540848 CHIC1Q5VXU3 224 aa30.3■■■□□ 2.44
LMO3-224ENST00000540848 SENP3Q9H4L4 574 aaPredicted RBP26.92■■□□□ 1.9
LMO3-224ENST00000540848 PHF23Q9BUL5 403 aaPredicted RBP26.67■■□□□ 1.86
LMO3-224ENST00000540848 FOXD1Q16676 465 aa25.19■■□□□ 1.62
LMO3-224ENST00000540848 PLPPR3Q6T4P5 718 aa24.22■■□□□ 1.47
LMO3-224ENST00000540848 PPP6R1Q9UPN7 881 aa23.76■■□□□ 1.39
LMO3-224ENST00000540848 ADRA2BP18089 450 aa23.65■■□□□ 1.38
LMO3-224ENST00000540848 PIAS4Q8N2W9 510 aaPredicted RBP23.5■■□□□ 1.35
LMO3-224ENST00000540848 MSH5O43196 834 aa23.35■■□□□ 1.33
LMO3-224ENST00000540848 POTEDQ86YR6 584 aa22.69■■□□□ 1.22
LMO3-224ENST00000540848 NISCHQ9Y2I1 1504 aa22.1■■□□□ 1.13
LMO3-224ENST00000540848 MAPK8IP2Q13387 824 aaPredicted RBP21.7■■□□□ 1.06
LMO3-224ENST00000540848 SCAF1Q9H7N4 1312 aaKnown RBP21.45■■□□□ 1.02
LMO3-224ENST00000540848 DMRT2Q9Y5R5 561 aa21.44■■□□□ 1.02
LMO3-224ENST00000540848 PPP4R3CPQ6ZMV5 832 aa21.31■■□□□ 1
LMO3-224ENST00000540848 CNKSR2Q8WXI2 1034 aa20.82■□□□□ 0.92
LMO3-224ENST00000540848 HOXD11P31277 338 aaPredicted RBP20.74■□□□□ 0.91
LMO3-224ENST00000540848 RNF216Q9NWF9 866 aaPredicted RBP20.59■□□□□ 0.89
LMO3-224ENST00000540848 DCAF8L1A6NGE4 600 aa20.46■□□□□ 0.87
LMO3-224ENST00000540848 NCBP3Q53F19 620 aaKnown RBP20.43■□□□□ 0.86
LMO3-224ENST00000540848 NPM3O75607 178 aaKnown RBP20.29■□□□□ 0.84
LMO3-224ENST00000540848 KCNA4P22459 653 aa20.1■□□□□ 0.81
LMO3-224ENST00000540848 RNF39Q9H2S5 420 aa20.04■□□□□ 0.8
LMO3-224ENST00000540848 CACNB1Q02641 598 aaPredicted RBP19.94■□□□□ 0.78
LMO3-224ENST00000540848 DNAJC5BQ9UF47 199 aa19.92■□□□□ 0.78
LMO3-224ENST00000540848 C1QBPQ07021 282 aaKnown RBP19.68■□□□□ 0.74
LMO3-224ENST00000540848 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.67■□□□□ 0.74
LMO3-224ENST00000540848 U3KPZ7 1027 aaPredicted RBP19.4■□□□□ 0.7
LMO3-224ENST00000540848 SLC4A2P04920 1241 aa19.38■□□□□ 0.69
LMO3-224ENST00000540848 CCDC180Q9P1Z9 1646 aa19.19■□□□□ 0.66
LMO3-224ENST00000540848 SPINK5Q9NQ38 1064 aaPredicted RBP19.07■□□□□ 0.64
LMO3-224ENST00000540848 SLC4A1APQ9BWU0 796 aaKnown RBP18.93■□□□□ 0.62
LMO3-224ENST00000540848 CAPN15O75808 1086 aa18.91■□□□□ 0.62
LMO3-224ENST00000540848 DSG3P32926 999 aa18.84■□□□□ 0.61
LMO3-224ENST00000540848 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.72■□□□□ 0.59
LMO3-224ENST00000540848 HNRNPUL2Q1KMD3 747 aaKnown RBP18.72■□□□□ 0.59
LMO3-224ENST00000540848 MYCNP04198 464 aaPredicted RBP18.68■□□□□ 0.58
LMO3-224ENST00000540848 TRHP20396 242 aaPredicted RBP18.68■□□□□ 0.58
LMO3-224ENST00000540848 SAMD1Q6SPF0 538 aaPredicted RBP18.68■□□□□ 0.58
LMO3-224ENST00000540848 APLP2Q06481 763 aa18.65■□□□□ 0.58
LMO3-224ENST00000540848 ZCCHC6Q5VYS8 1495 aaKnown RBP18.65■□□□□ 0.58
LMO3-224ENST00000540848 FOXD4L1Q9NU39 408 aa18.61■□□□□ 0.57
LMO3-224ENST00000540848 ZNF219Q9P2Y4 722 aaPredicted RBP18.6■□□□□ 0.57
LMO3-224ENST00000540848 ZBTB22O15209 634 aa18.56■□□□□ 0.56
LMO3-224ENST00000540848 ABCB7O75027 752 aa18.56■□□□□ 0.56
LMO3-224ENST00000540848 ATF5Q9Y2D1 282 aaPredicted RBP18.39■□□□□ 0.53
LMO3-224ENST00000540848 DCAF1Q9Y4B6 1507 aa18.38■□□□□ 0.53
LMO3-224ENST00000540848 POLA2Q14181 598 aa18.25■□□□□ 0.51
LMO3-224ENST00000540848 SHROOM4Q9ULL8 1493 aa18.1■□□□□ 0.49
LMO3-224ENST00000540848 MYO15BQ96JP2 1530 aa18.05■□□□□ 0.48
LMO3-224ENST00000540848 ATXN8OSP0DMR3 200 aa18■□□□□ 0.47
LMO3-224ENST00000540848 DCAF8L2P0C7V8 631 aa17.98■□□□□ 0.47
LMO3-224ENST00000540848 CSRNP3Q8WYN3 585 aa17.83■□□□□ 0.45
LMO3-224ENST00000540848 RBM42Q9BTD8 480 aaKnown RBP17.83■□□□□ 0.45
LMO3-224ENST00000540848 NACADO15069 1562 aa17.78■□□□□ 0.44
LMO3-224ENST00000540848 ZBTB12Q9Y330 459 aaPredicted RBP17.78■□□□□ 0.44
LMO3-224ENST00000540848 POTEHQ6S545 545 aa17.69■□□□□ 0.42
LMO3-224ENST00000540848 OSCARQ8IYS5 282 aa17.68■□□□□ 0.42
LMO3-224ENST00000540848 ABCC9O60706 1549 aa17.66■□□□□ 0.42
LMO3-224ENST00000540848 EHMT2Q96KQ7 1210 aa17.64■□□□□ 0.41
LMO3-224ENST00000540848 SUPT5HO00267 1087 aaKnown RBP17.61■□□□□ 0.41
LMO3-224ENST00000540848 SCRIBQ14160 1630 aa17.56■□□□□ 0.4
LMO3-224ENST00000540848 MKRN4PQ13434 485 aaPredicted RBP17.54■□□□□ 0.4
LMO3-224ENST00000540848 AKT1S1Q96B36 256 aa17.53■□□□□ 0.4
LMO3-224ENST00000540848 RB1CC1Q8TDY2 1594 aa17.52■□□□□ 0.4
LMO3-224ENST00000540848 CHRDL2Q6WN34 429 aa17.45■□□□□ 0.38
LMO3-224ENST00000540848 FBLN2P98095 1184 aa17.45■□□□□ 0.38
LMO3-224ENST00000540848 REM2Q8IYK8 340 aaPredicted RBP17.41■□□□□ 0.38
LMO3-224ENST00000540848 SPDYE2BA6NHP3 402 aa17.32■□□□□ 0.36
LMO3-224ENST00000540848 SPDYE6P0CI01 402 aa17.32■□□□□ 0.36
LMO3-224ENST00000540848 SPDYE2Q495Y8 402 aa17.32■□□□□ 0.36
LMO3-224ENST00000540848 PITPNM1O00562 1244 aa17.24■□□□□ 0.35
LMO3-224ENST00000540848 RSF1Q96T23 1441 aaPredicted RBP17.24■□□□□ 0.35
LMO3-224ENST00000540848 SSUH2Q9Y2M2 353 aa17.18■□□□□ 0.34
LMO3-224ENST00000540848 ZNF692Q9BU19 519 aaPredicted RBP17.14■□□□□ 0.33
LMO3-224ENST00000540848 PIP4P2Q8N4L2 257 aa17.12■□□□□ 0.33
LMO3-224ENST00000540848 UNC13AQ9UPW8 1703 aa17.11■□□□□ 0.33
LMO3-224ENST00000540848 BAZ1AQ9NRL2 1556 aaPredicted RBP17.07■□□□□ 0.32
LMO3-224ENST00000540848 FXR2P51116 673 aaKnown RBP eCLIP17.05■□□□□ 0.32
LMO3-224ENST00000540848 CECR2Q9BXF3 1484 aa17.05■□□□□ 0.32
LMO3-224ENST00000540848 MROH2BQ7Z745 1585 aa17.03■□□□□ 0.32
LMO3-224ENST00000540848 SPDYE1Q8NFV5 336 aaPredicted RBP16.94■□□□□ 0.3
LMO3-224ENST00000540848 PABPN1Q86U42 306 aaKnown RBP eCLIP16.93■□□□□ 0.3
LMO3-224ENST00000540848 SMARCA4P51532 1647 aa16.92■□□□□ 0.3
LMO3-224ENST00000540848 CLEC11AQ9Y240 323 aa16.92■□□□□ 0.3
LMO3-224ENST00000540848 BICRAQ9NZM4 1560 aa16.91■□□□□ 0.3
LMO3-224ENST00000540848 WIZO95785 1651 aa16.9■□□□□ 0.3
LMO3-224ENST00000540848 TOP2AP11388 1531 aaKnown RBP16.82■□□□□ 0.28
LMO3-224ENST00000540848 PRKAR2AP13861 404 aaKnown RBP16.76■□□□□ 0.27
LMO3-224ENST00000540848 PEG3Q9GZU2 1588 aa16.76■□□□□ 0.27
LMO3-224ENST00000540848 SPDYE4A6NLX3 237 aa16.69■□□□□ 0.26
LMO3-224ENST00000540848 HAX1O00165 279 aa16.68■□□□□ 0.26
LMO3-224ENST00000540848 SP7Q8TDD2 431 aaPredicted RBP16.67■□□□□ 0.26
LMO3-224ENST00000540848 CHADLQ6NUI6 762 aa16.66■□□□□ 0.26
LMO3-224ENST00000540848 PRR29P0C7W0 189 aa16.65■□□□□ 0.26
LMO3-224ENST00000540848 EVX2Q03828 476 aa16.65■□□□□ 0.26
LMO3-224ENST00000540848 EIF4G1Q04637 1599 aaKnown RBP16.65■□□□□ 0.26
LMO3-224ENST00000540848 SMARCA2P51531 1590 aa16.63■□□□□ 0.25
LMO3-224ENST00000540848 TRIM41Q8WV44 630 aa16.61■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms