Protein–RNA interactions for Protein: Q9NP77

SSU72, RNA polymerase II subunit A C-terminal domain phosphatase SSU72, humanhuman

Known RBP Predictions only

Length 194 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSU72Q9NP77 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SSU72Q9NP77 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC16.82■□□□□ 0.28
SSU72Q9NP77 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC16.82■□□□□ 0.28
SSU72Q9NP77 PRAG1-202ENST00000622241 4639 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
SSU72Q9NP77 PTBP1-202ENST00000350092 3069 ntAPPRIS ALT1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SSU72Q9NP77 SUSD4-204ENST00000366878 3025 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SSU72Q9NP77 PXK-204ENST00000383716 3035 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
SSU72Q9NP77 CROCCP1-201ENST00000426910 5675 ntBASIC16.82■□□□□ 0.28
SSU72Q9NP77 KDM6B-202ENST00000448097 5422 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
SSU72Q9NP77 ALPL-204ENST00000374840 2589 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
SSU72Q9NP77 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC16.82■□□□□ 0.28
SSU72Q9NP77 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
SSU72Q9NP77 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
SSU72Q9NP77 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
SSU72Q9NP77 AC117947.1-201ENST00000427448 529 ntBASIC16.82■□□□□ 0.28
SSU72Q9NP77 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC16.82■□□□□ 0.28
SSU72Q9NP77 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC16.82■□□□□ 0.28
SSU72Q9NP77 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
SSU72Q9NP77 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
SSU72Q9NP77 DFFB-212ENST00000625756 649 ntTSL 5 BASIC16.82■□□□□ 0.28
SSU72Q9NP77 DACT1-202ENST00000395153 3734 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
SSU72Q9NP77 DAP-201ENST00000230895 2339 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SSU72Q9NP77 TMTC2-201ENST00000321196 5681 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SSU72Q9NP77 SLITRK4-201ENST00000338017 3357 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SSU72Q9NP77 TAF1D-203ENST00000448108 2082 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
SSU72Q9NP77 RAB9A-202ENST00000464506 2039 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SSU72Q9NP77 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
SSU72Q9NP77 ZNF512B-201ENST00000369888 5919 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SSU72Q9NP77 LINC00599-203ENST00000519461 2922 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
SSU72Q9NP77 BDP1-202ENST00000380675 2861 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
SSU72Q9NP77 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
SSU72Q9NP77 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
SSU72Q9NP77 JMY-201ENST00000396137 9042 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
SSU72Q9NP77 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
SSU72Q9NP77 LRRC57-204ENST00000563454 2407 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
SSU72Q9NP77 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
SSU72Q9NP77 EGFR-203ENST00000344576 2864 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
SSU72Q9NP77 CACFD1-201ENST00000291722 2688 ntTSL 2 BASIC16.81■□□□□ 0.28
SSU72Q9NP77 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC16.81■□□□□ 0.28
SSU72Q9NP77 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
SSU72Q9NP77 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC16.81■□□□□ 0.28
SSU72Q9NP77 TTLL11-201ENST00000321582 3250 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
SSU72Q9NP77 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
SSU72Q9NP77 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC16.81■□□□□ 0.28
SSU72Q9NP77 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
SSU72Q9NP77 TSPY5P-201ENST00000426936 936 ntBASIC16.81■□□□□ 0.28
SSU72Q9NP77 AL109741.1-201ENST00000432195 403 ntTSL 2 BASIC16.81■□□□□ 0.28
SSU72Q9NP77 BAALC-AS2-201ENST00000436771 496 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
SSU72Q9NP77 SIGLEC30P-201ENST00000455569 941 ntBASIC16.81■□□□□ 0.28
SSU72Q9NP77 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
SSU72Q9NP77 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC16.81■□□□□ 0.28
SSU72Q9NP77 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC16.81■□□□□ 0.28
SSU72Q9NP77 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC16.81■□□□□ 0.28
SSU72Q9NP77 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC16.81■□□□□ 0.28
SSU72Q9NP77 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
SSU72Q9NP77 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
SSU72Q9NP77 ARFGAP1-210ENST00000519273 3176 ntTSL 2 BASIC16.81■□□□□ 0.28
SSU72Q9NP77 ENDOV-212ENST00000520284 2500 ntTSL 2 BASIC16.81■□□□□ 0.28
SSU72Q9NP77 FAM189B-202ENST00000361361 3082 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
SSU72Q9NP77 SP100-205ENST00000409824 1802 ntTSL 5 BASIC16.81■□□□□ 0.28
SSU72Q9NP77 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC16.81■□□□□ 0.28
SSU72Q9NP77 SLC27A5-201ENST00000263093 2361 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
SSU72Q9NP77 HMGA1-202ENST00000347617 1773 ntAPPRIS ALT1 TSL 1 (best) BASIC16.81■□□□□ 0.28
SSU72Q9NP77 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC16.81■□□□□ 0.28
SSU72Q9NP77 RNF182-206ENST00000537388 3274 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
SSU72Q9NP77 DCAF11-217ENST00000559115 2711 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
SSU72Q9NP77 SERPINB6-201ENST00000335686 1604 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
SSU72Q9NP77 MAP4K1-208ENST00000589130 2654 ntTSL 5 BASIC16.81■□□□□ 0.28
SSU72Q9NP77 CYP4B1-203ENST00000371923 2110 ntAPPRIS ALT1 TSL 1 (best) BASIC16.81■□□□□ 0.28
SSU72Q9NP77 SCRIB-202ENST00000356994 5218 ntAPPRIS P4 TSL 2 BASIC16.81■□□□□ 0.28
SSU72Q9NP77 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
SSU72Q9NP77 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
SSU72Q9NP77 KDM5C-204ENST00000375401 6031 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
SSU72Q9NP77 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC16.8■□□□□ 0.28
SSU72Q9NP77 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
SSU72Q9NP77 MOV10L1-203ENST00000395852 1422 ntTSL 2 BASIC16.8■□□□□ 0.28
SSU72Q9NP77 FAM222B-202ENST00000452648 2836 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
SSU72Q9NP77 TSSC2-204ENST00000529482 2337 ntTSL 2 BASIC16.8■□□□□ 0.28
SSU72Q9NP77 GTF2H1-203ENST00000453096 2707 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
SSU72Q9NP77 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC16.8■□□□□ 0.28
SSU72Q9NP77 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
SSU72Q9NP77 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC16.8■□□□□ 0.28
SSU72Q9NP77 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
SSU72Q9NP77 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC16.8■□□□□ 0.28
SSU72Q9NP77 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC16.8■□□□□ 0.28
SSU72Q9NP77 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
SSU72Q9NP77 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
SSU72Q9NP77 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC16.8■□□□□ 0.28
SSU72Q9NP77 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC16.8■□□□□ 0.28
SSU72Q9NP77 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
SSU72Q9NP77 INA-201ENST00000369849 3231 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
SSU72Q9NP77 FSD2-202ENST00000541889 2356 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
SSU72Q9NP77 PMPCAP1-201ENST00000508114 1576 ntBASIC16.8■□□□□ 0.28
SSU72Q9NP77 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
SSU72Q9NP77 KIFC1-211ENST00000428849 2706 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
SSU72Q9NP77 PTK7-202ENST00000230419 4272 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
SSU72Q9NP77 SBSN-201ENST00000452271 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
SSU72Q9NP77 NFATC4-210ENST00000554050 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
SSU72Q9NP77 BRF1-201ENST00000327359 2292 ntTSL 2 BASIC16.8■□□□□ 0.28
SSU72Q9NP77 ZBTB7C-221ENST00000590800 4947 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 24.9 ms