Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC18.54■□□□□ 0.56
TRAIPQ9BWF2 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC18.54■□□□□ 0.56
TRAIPQ9BWF2 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC18.54■□□□□ 0.56
TRAIPQ9BWF2 WNT2-201ENST00000265441 2907 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
TRAIPQ9BWF2 FBXL22-202ENST00000534939 2443 ntAPPRIS ALT2 TSL 3 BASIC18.53■□□□□ 0.56
TRAIPQ9BWF2 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC18.53■□□□□ 0.56
TRAIPQ9BWF2 AC092919.2-201ENST00000623631 1645 ntBASIC18.53■□□□□ 0.56
TRAIPQ9BWF2 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
TRAIPQ9BWF2 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC18.53■□□□□ 0.56
TRAIPQ9BWF2 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
TRAIPQ9BWF2 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC18.53■□□□□ 0.56
TRAIPQ9BWF2 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
TRAIPQ9BWF2 TMEM179B-201ENST00000333449 1023 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
TRAIPQ9BWF2 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
TRAIPQ9BWF2 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC18.53■□□□□ 0.56
TRAIPQ9BWF2 AC002056.1-201ENST00000395613 760 ntBASIC18.53■□□□□ 0.56
TRAIPQ9BWF2 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
TRAIPQ9BWF2 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
TRAIPQ9BWF2 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC18.53■□□□□ 0.56
TRAIPQ9BWF2 MIR4515-201ENST00000584082 81 ntBASIC18.53■□□□□ 0.56
TRAIPQ9BWF2 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC18.53■□□□□ 0.56
TRAIPQ9BWF2 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
TRAIPQ9BWF2 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC18.53■□□□□ 0.56
TRAIPQ9BWF2 AC027612.4-201ENST00000605371 583 ntBASIC18.53■□□□□ 0.56
TRAIPQ9BWF2 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC18.53■□□□□ 0.56
TRAIPQ9BWF2 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC18.53■□□□□ 0.56
TRAIPQ9BWF2 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC18.53■□□□□ 0.56
TRAIPQ9BWF2 AL138688.1-201ENST00000624851 1594 ntBASIC18.53■□□□□ 0.56
TRAIPQ9BWF2 PCDHA8-202ENST00000531613 5260 ntAPPRIS P2 TSL 1 (best) BASIC18.53■□□□□ 0.56
TRAIPQ9BWF2 CDH6-205ENST00000514738 2569 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
TRAIPQ9BWF2 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
TRAIPQ9BWF2 EIF4E1B-201ENST00000318682 1974 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
TRAIPQ9BWF2 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
TRAIPQ9BWF2 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
TRAIPQ9BWF2 AC099398.1-201ENST00000567919 2776 ntBASIC18.53■□□□□ 0.56
TRAIPQ9BWF2 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
TRAIPQ9BWF2 ZSWIM8-223ENST00000605216 6004 ntAPPRIS P2 TSL 1 (best) BASIC18.53■□□□□ 0.56
TRAIPQ9BWF2 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
TRAIPQ9BWF2 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
TRAIPQ9BWF2 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
TRAIPQ9BWF2 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
TRAIPQ9BWF2 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC18.52■□□□□ 0.56
TRAIPQ9BWF2 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.56
TRAIPQ9BWF2 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
TRAIPQ9BWF2 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
TRAIPQ9BWF2 AC016396.2-201ENST00000562575 1417 ntBASIC18.52■□□□□ 0.56
TRAIPQ9BWF2 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
TRAIPQ9BWF2 PON3-203ENST00000427422 894 ntTSL 3 BASIC18.52■□□□□ 0.56
TRAIPQ9BWF2 HMGN1P19-201ENST00000436976 333 ntBASIC18.52■□□□□ 0.56
TRAIPQ9BWF2 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC18.52■□□□□ 0.56
TRAIPQ9BWF2 NDUFS7-216ENST00000546283 1060 ntTSL 2 BASIC18.52■□□□□ 0.56
TRAIPQ9BWF2 THTPA-204ENST00000554970 569 ntTSL 4 BASIC18.52■□□□□ 0.56
TRAIPQ9BWF2 RNF34-208ENST00000555076 593 ntTSL 3 BASIC18.52■□□□□ 0.56
TRAIPQ9BWF2 THTPA-206ENST00000556015 535 ntTSL 3 BASIC18.52■□□□□ 0.56
TRAIPQ9BWF2 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC18.52■□□□□ 0.56
TRAIPQ9BWF2 AC005412.3-201ENST00000580309 715 ntBASIC18.52■□□□□ 0.56
TRAIPQ9BWF2 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC18.52■□□□□ 0.56
TRAIPQ9BWF2 BSG-214ENST00000614867 960 ntTSL 3 BASIC18.52■□□□□ 0.56
TRAIPQ9BWF2 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
TRAIPQ9BWF2 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
TRAIPQ9BWF2 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
TRAIPQ9BWF2 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC18.52■□□□□ 0.55
TRAIPQ9BWF2 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
TRAIPQ9BWF2 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
TRAIPQ9BWF2 AD000864.1-201ENST00000624076 2295 ntBASIC18.52■□□□□ 0.55
TRAIPQ9BWF2 CDC73-201ENST00000367435 4969 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
TRAIPQ9BWF2 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC18.51■□□□□ 0.55
TRAIPQ9BWF2 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
TRAIPQ9BWF2 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
TRAIPQ9BWF2 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC18.51■□□□□ 0.55
TRAIPQ9BWF2 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
TRAIPQ9BWF2 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
TRAIPQ9BWF2 AP001094.4-201ENST00000579008 2176 ntBASIC18.51■□□□□ 0.55
TRAIPQ9BWF2 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC18.51■□□□□ 0.55
TRAIPQ9BWF2 IL2RG-202ENST00000374188 1432 ntTSL 5 BASIC18.51■□□□□ 0.55
TRAIPQ9BWF2 HARS-203ENST00000431330 1774 ntTSL 2 BASIC18.51■□□□□ 0.55
TRAIPQ9BWF2 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC18.51■□□□□ 0.55
TRAIPQ9BWF2 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC18.51■□□□□ 0.55
TRAIPQ9BWF2 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC18.51■□□□□ 0.55
TRAIPQ9BWF2 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
TRAIPQ9BWF2 HRAS-205ENST00000451590 1151 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
TRAIPQ9BWF2 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC18.51■□□□□ 0.55
TRAIPQ9BWF2 SEC24B-AS1-201ENST00000499359 957 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
TRAIPQ9BWF2 SEC24B-AS1-204ENST00000510971 554 ntTSL 4 BASIC18.51■□□□□ 0.55
TRAIPQ9BWF2 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC18.51■□□□□ 0.55
TRAIPQ9BWF2 RFPL4AP1-201ENST00000530883 850 ntBASIC18.51■□□□□ 0.55
TRAIPQ9BWF2 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC18.51■□□□□ 0.55
TRAIPQ9BWF2 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
TRAIPQ9BWF2 IGHV3OR16-6-201ENST00000568775 360 ntBASIC18.51■□□□□ 0.55
TRAIPQ9BWF2 GPR42-202ENST00000597214 1182 ntAPPRIS P1 BASIC18.51■□□□□ 0.55
TRAIPQ9BWF2 AC004835.2-201ENST00000603762 682 ntBASIC18.51■□□□□ 0.55
TRAIPQ9BWF2 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC18.51■□□□□ 0.55
TRAIPQ9BWF2 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC18.51■□□□□ 0.55
TRAIPQ9BWF2 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC18.51■□□□□ 0.55
TRAIPQ9BWF2 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
TRAIPQ9BWF2 BIRC7-201ENST00000217169 1368 ntAPPRIS P4 TSL 1 (best) BASIC18.51■□□□□ 0.55
TRAIPQ9BWF2 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
TRAIPQ9BWF2 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
TRAIPQ9BWF2 FAM135A-209ENST00000505769 4806 ntTSL 5 BASIC18.51■□□□□ 0.55
TRAIPQ9BWF2 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 38.3 ms