Protein–RNA interactions for Protein: Q96M19

LINC00477, Putative transmembrane protein encoded by LINC00477, humanhuman

Predictions only

Length 166 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00477Q96M19 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC12.74□□□□□ -0.37
LINC00477Q96M19 CHAD-203ENST00000508540 1789 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
LINC00477Q96M19 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
LINC00477Q96M19 FUS-201ENST00000254108 5119 ntAPPRIS P3 TSL 1 (best) BASIC12.74□□□□□ -0.37
LINC00477Q96M19 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC12.73□□□□□ -0.37
LINC00477Q96M19 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC12.73□□□□□ -0.37
LINC00477Q96M19 ITPK1-210ENST00000556603 3174 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
LINC00477Q96M19 TTC8-216ENST00000614125 2377 ntTSL 5 BASIC12.73□□□□□ -0.37
LINC00477Q96M19 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC12.73□□□□□ -0.37
LINC00477Q96M19 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
LINC00477Q96M19 LTBP2-201ENST00000261978 8567 ntAPPRIS P2 TSL 1 (best) BASIC12.73□□□□□ -0.37
LINC00477Q96M19 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC12.73□□□□□ -0.37
LINC00477Q96M19 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
LINC00477Q96M19 COLGALT2-201ENST00000361927 5177 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
LINC00477Q96M19 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
LINC00477Q96M19 SMC4-204ENST00000462787 5033 ntTSL 2 BASIC12.73□□□□□ -0.37
LINC00477Q96M19 ACE-202ENST00000290866 4959 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
LINC00477Q96M19 DISC1-209ENST00000439617 7059 ntAPPRIS ALT2 TSL 5 BASIC12.73□□□□□ -0.37
LINC00477Q96M19 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
LINC00477Q96M19 BACE1-211ENST00000528053 4083 ntTSL 5 BASIC12.73□□□□□ -0.37
LINC00477Q96M19 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC12.73□□□□□ -0.37
LINC00477Q96M19 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC12.73□□□□□ -0.37
LINC00477Q96M19 ALG12-201ENST00000330817 5350 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
LINC00477Q96M19 TAX1BP3-202ENST00000611779 1302 ntTSL 2 BASIC12.73□□□□□ -0.37
LINC00477Q96M19 UBALD1-205ENST00000590891 2641 ntBASIC12.73□□□□□ -0.37
LINC00477Q96M19 NEDD4-202ENST00000435532 5869 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
LINC00477Q96M19 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
LINC00477Q96M19 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
LINC00477Q96M19 FUOM-202ENST00000368551 628 ntTSL 3 BASIC12.73□□□□□ -0.37
LINC00477Q96M19 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
LINC00477Q96M19 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
LINC00477Q96M19 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC12.73□□□□□ -0.37
LINC00477Q96M19 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC12.73□□□□□ -0.37
LINC00477Q96M19 CIB2-208ENST00000560618 804 ntTSL 2 BASIC12.73□□□□□ -0.37
LINC00477Q96M19 NME3-204ENST00000563498 920 ntTSL 2 BASIC12.73□□□□□ -0.37
LINC00477Q96M19 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC12.73□□□□□ -0.37
LINC00477Q96M19 ANAPC11-217ENST00000579978 575 ntAPPRIS P1 TSL 2 BASIC12.73□□□□□ -0.37
LINC00477Q96M19 MAP3K14-AS1-202ENST00000585351 893 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
LINC00477Q96M19 IL11-204ENST00000590625 1028 ntTSL 2 BASIC12.73□□□□□ -0.37
LINC00477Q96M19 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC12.73□□□□□ -0.37
LINC00477Q96M19 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC12.73□□□□□ -0.37
LINC00477Q96M19 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC12.73□□□□□ -0.37
LINC00477Q96M19 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
LINC00477Q96M19 AC114341.1-201ENST00000618070 349 ntBASIC12.73□□□□□ -0.37
LINC00477Q96M19 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
LINC00477Q96M19 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
LINC00477Q96M19 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
LINC00477Q96M19 ZNF18-204ENST00000580306 2330 ntAPPRIS P3 TSL 2 BASIC12.73□□□□□ -0.37
LINC00477Q96M19 PON2-201ENST00000222572 1745 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
LINC00477Q96M19 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
LINC00477Q96M19 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC12.73□□□□□ -0.37
LINC00477Q96M19 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
LINC00477Q96M19 FNDC5-201ENST00000373471 2732 ntAPPRIS ALT2 TSL 2 BASIC12.73□□□□□ -0.37
LINC00477Q96M19 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC12.73□□□□□ -0.37
LINC00477Q96M19 CHST3-201ENST00000373115 6970 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
LINC00477Q96M19 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC12.73□□□□□ -0.37
LINC00477Q96M19 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC12.73□□□□□ -0.37
LINC00477Q96M19 SLC4A5-203ENST00000377632 3123 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
LINC00477Q96M19 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
LINC00477Q96M19 UHMK1-202ENST00000489294 8478 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
LINC00477Q96M19 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
LINC00477Q96M19 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC12.72□□□□□ -0.37
LINC00477Q96M19 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.37
LINC00477Q96M19 SIGLEC16-201ENST00000599858 1437 ntBASIC12.72□□□□□ -0.37
LINC00477Q96M19 SYT3-202ENST00000593901 2836 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
LINC00477Q96M19 STOX1-204ENST00000399169 3281 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
LINC00477Q96M19 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC12.72□□□□□ -0.37
LINC00477Q96M19 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
LINC00477Q96M19 PRKX-201ENST00000262848 6031 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
LINC00477Q96M19 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC12.72□□□□□ -0.37
LINC00477Q96M19 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC12.72□□□□□ -0.37
LINC00477Q96M19 ST3GAL2-201ENST00000342907 4450 ntAPPRIS P1 TSL 5 BASIC12.72□□□□□ -0.37
LINC00477Q96M19 FEM1B-201ENST00000306917 7122 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
LINC00477Q96M19 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
LINC00477Q96M19 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC12.72□□□□□ -0.37
LINC00477Q96M19 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC12.72□□□□□ -0.37
LINC00477Q96M19 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC12.72□□□□□ -0.37
LINC00477Q96M19 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
LINC00477Q96M19 PTPN21-201ENST00000328736 6089 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
LINC00477Q96M19 CHSY3-201ENST00000305031 3850 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
LINC00477Q96M19 BCL2L10-201ENST00000260442 1249 ntAPPRIS P3 TSL 1 (best) BASIC12.72□□□□□ -0.37
LINC00477Q96M19 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
LINC00477Q96M19 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC12.72□□□□□ -0.37
LINC00477Q96M19 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
LINC00477Q96M19 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC12.72□□□□□ -0.37
LINC00477Q96M19 SPDYE21P-201ENST00000413323 827 ntBASIC12.72□□□□□ -0.37
LINC00477Q96M19 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
LINC00477Q96M19 IGHV3-47-201ENST00000425060 335 ntBASIC12.72□□□□□ -0.37
LINC00477Q96M19 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC12.72□□□□□ -0.37
LINC00477Q96M19 TOB2P1-201ENST00000469761 992 ntBASIC12.72□□□□□ -0.37
LINC00477Q96M19 TPSP2-201ENST00000561760 610 ntBASIC12.72□□□□□ -0.37
LINC00477Q96M19 BNIP3P18-201ENST00000593976 575 ntBASIC12.72□□□□□ -0.37
LINC00477Q96M19 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC12.72□□□□□ -0.37
LINC00477Q96M19 SIK3-201ENST00000375300 6213 ntAPPRIS P3 TSL 2 BASIC12.72□□□□□ -0.37
LINC00477Q96M19 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
LINC00477Q96M19 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC12.72□□□□□ -0.37
LINC00477Q96M19 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC12.72□□□□□ -0.37
LINC00477Q96M19 UNC119B-201ENST00000344651 4404 ntAPPRIS P1 TSL 2 BASIC12.72□□□□□ -0.37
LINC00477Q96M19 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC12.72□□□□□ -0.37
LINC00477Q96M19 STOML1-204ENST00000541638 6336 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Retrieved 100 of 98,524 protein–RNA pairs in 27.8 ms