Protein–RNA interactions for Protein: Q96II8

LRCH3, Leucine-rich repeat and calponin homology domain-containing protein 3, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3Q96II8 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC18.25■□□□□ 0.51
LRCH3Q96II8 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
LRCH3Q96II8 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
LRCH3Q96II8 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC18.25■□□□□ 0.51
LRCH3Q96II8 CD276-201ENST00000318424 2738 ntTSL 5 BASIC18.25■□□□□ 0.51
LRCH3Q96II8 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC18.25■□□□□ 0.51
LRCH3Q96II8 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC18.25■□□□□ 0.51
LRCH3Q96II8 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
LRCH3Q96II8 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
LRCH3Q96II8 HARS2-206ENST00000508522 1562 ntTSL 2 BASIC18.25■□□□□ 0.51
LRCH3Q96II8 GFY-202ENST00000610896 1557 ntAPPRIS P1 TSL 2 BASIC18.25■□□□□ 0.51
LRCH3Q96II8 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
LRCH3Q96II8 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC18.25■□□□□ 0.51
LRCH3Q96II8 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC18.25■□□□□ 0.51
LRCH3Q96II8 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC18.24■□□□□ 0.51
LRCH3Q96II8 RAD51C-215ENST00000583539 1319 ntAPPRIS ALT2 TSL 2 BASIC18.24■□□□□ 0.51
LRCH3Q96II8 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC18.24■□□□□ 0.51
LRCH3Q96II8 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC18.24■□□□□ 0.51
LRCH3Q96II8 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
LRCH3Q96II8 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
LRCH3Q96II8 AL023806.1-201ENST00000603994 1649 ntBASIC18.24■□□□□ 0.51
LRCH3Q96II8 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
LRCH3Q96II8 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
LRCH3Q96II8 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
LRCH3Q96II8 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
LRCH3Q96II8 PDE6D-201ENST00000287600 1175 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
LRCH3Q96II8 CSHL1-203ENST00000346606 659 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
LRCH3Q96II8 PSMB9-207ENST00000374859 782 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
LRCH3Q96II8 AF274855.1-203ENST00000424126 800 ntTSL 3 BASIC18.24■□□□□ 0.51
LRCH3Q96II8 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC18.24■□□□□ 0.51
LRCH3Q96II8 DSCR3-207ENST00000476950 937 ntTSL 2 BASIC18.24■□□□□ 0.51
LRCH3Q96II8 RAB7A-204ENST00000483906 533 ntTSL 3 BASIC18.24■□□□□ 0.51
LRCH3Q96II8 AC104989.1-201ENST00000519711 778 ntBASIC18.24■□□□□ 0.51
LRCH3Q96II8 AL133153.2-201ENST00000557524 303 ntTSL 3 BASIC18.24■□□□□ 0.51
LRCH3Q96II8 AC009134.1-201ENST00000571939 443 ntTSL 3 BASIC18.24■□□□□ 0.51
LRCH3Q96II8 AC004790.1-201ENST00000612686 536 ntBASIC18.24■□□□□ 0.51
LRCH3Q96II8 TEX28P1-201ENST00000613479 1221 ntBASIC18.24■□□□□ 0.51
LRCH3Q96II8 AC007967.4-201ENST00000614700 386 ntBASIC18.24■□□□□ 0.51
LRCH3Q96II8 TEX28P2-201ENST00000617764 1221 ntBASIC18.24■□□□□ 0.51
LRCH3Q96II8 HAUS8-201ENST00000253669 1568 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
LRCH3Q96II8 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
LRCH3Q96II8 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
LRCH3Q96II8 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
LRCH3Q96II8 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
LRCH3Q96II8 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
LRCH3Q96II8 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
LRCH3Q96II8 AC068880.1-201ENST00000507289 2297 ntBASIC18.24■□□□□ 0.51
LRCH3Q96II8 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
LRCH3Q96II8 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
LRCH3Q96II8 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC18.24■□□□□ 0.51
LRCH3Q96II8 MKRN3-203ENST00000568252 1312 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
LRCH3Q96II8 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
LRCH3Q96II8 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
LRCH3Q96II8 BCS1L-205ENST00000412366 1430 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
LRCH3Q96II8 ACTR2-205ENST00000542850 1429 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
LRCH3Q96II8 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
LRCH3Q96II8 CD81-201ENST00000263645 1520 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
LRCH3Q96II8 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
LRCH3Q96II8 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC18.23■□□□□ 0.51
LRCH3Q96II8 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC18.23■□□□□ 0.51
LRCH3Q96II8 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
LRCH3Q96II8 ORMDL1-203ENST00000392350 2009 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
LRCH3Q96II8 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
LRCH3Q96II8 EVX2-201ENST00000308618 4203 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
LRCH3Q96II8 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
LRCH3Q96II8 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC18.23■□□□□ 0.51
LRCH3Q96II8 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC18.23■□□□□ 0.51
LRCH3Q96II8 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
LRCH3Q96II8 CIDEA-201ENST00000320477 828 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
LRCH3Q96II8 SPDYE19P-201ENST00000338590 713 ntBASIC18.23■□□□□ 0.51
LRCH3Q96II8 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
LRCH3Q96II8 AL096814.1-202ENST00000372963 647 ntAPPRIS P5 TSL 2 BASIC18.23■□□□□ 0.51
LRCH3Q96II8 TEX30-202ENST00000376021 1038 ntTSL 2 BASIC18.23■□□□□ 0.51
LRCH3Q96II8 AC017116.1-201ENST00000445938 708 ntTSL 3 BASIC18.23■□□□□ 0.51
LRCH3Q96II8 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC18.23■□□□□ 0.51
LRCH3Q96II8 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC18.23■□□□□ 0.51
LRCH3Q96II8 AL133523.1-201ENST00000554537 331 ntTSL 3 BASIC18.23■□□□□ 0.51
LRCH3Q96II8 LINC02205-201ENST00000559752 239 ntTSL 5 BASIC18.23■□□□□ 0.51
LRCH3Q96II8 AC087645.2-202ENST00000586583 643 ntTSL 4 BASIC18.23■□□□□ 0.51
LRCH3Q96II8 SFT2D2-204ENST00000630869 1073 ntTSL 4 BASIC18.23■□□□□ 0.51
LRCH3Q96II8 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC18.23■□□□□ 0.51
LRCH3Q96II8 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
LRCH3Q96II8 ABHD13-201ENST00000375898 5338 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
LRCH3Q96II8 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
LRCH3Q96II8 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC18.23■□□□□ 0.51
LRCH3Q96II8 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC18.23■□□□□ 0.51
LRCH3Q96II8 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC18.23■□□□□ 0.51
LRCH3Q96II8 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC18.23■□□□□ 0.51
LRCH3Q96II8 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC18.23■□□□□ 0.51
LRCH3Q96II8 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
LRCH3Q96II8 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC18.23■□□□□ 0.51
LRCH3Q96II8 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
LRCH3Q96II8 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
LRCH3Q96II8 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
LRCH3Q96II8 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
LRCH3Q96II8 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
LRCH3Q96II8 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
LRCH3Q96II8 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC18.22■□□□□ 0.51
LRCH3Q96II8 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
LRCH3Q96II8 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 29.6 ms