Protein–RNA interactions for Protein: Q92889

ERCC4, DNA repair endonuclease XPF, humanhuman

Predicted RBP Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC4Q92889 PI16-201ENST00000373674 2190 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
ERCC4Q92889 DIDO1-201ENST00000266070 8574 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
ERCC4Q92889 PPP1R3E-201ENST00000452015 4773 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
ERCC4Q92889 DNM2-203ENST00000389253 3581 ntTSL 5 BASIC19.26■□□□□ 0.67
ERCC4Q92889 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC19.26■□□□□ 0.67
ERCC4Q92889 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC19.26■□□□□ 0.67
ERCC4Q92889 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
ERCC4Q92889 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
ERCC4Q92889 PITPNC1-203ENST00000580974 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
ERCC4Q92889 AC003669.1-201ENST00000334569 611 ntBASIC19.26■□□□□ 0.67
ERCC4Q92889 BEX4-201ENST00000372691 1066 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
ERCC4Q92889 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
ERCC4Q92889 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
ERCC4Q92889 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC19.26■□□□□ 0.67
ERCC4Q92889 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC19.26■□□□□ 0.67
ERCC4Q92889 TSSC2-201ENST00000450217 709 ntBASIC19.26■□□□□ 0.67
ERCC4Q92889 AC096582.2-201ENST00000510860 516 ntBASIC19.26■□□□□ 0.67
ERCC4Q92889 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC19.26■□□□□ 0.67
ERCC4Q92889 AP002414.4-201ENST00000589764 1148 ntBASIC19.26■□□□□ 0.67
ERCC4Q92889 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC19.26■□□□□ 0.67
ERCC4Q92889 AC116407.4-201ENST00000623319 1061 ntBASIC19.26■□□□□ 0.67
ERCC4Q92889 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
ERCC4Q92889 TCP1-203ENST00000420894 1671 ntTSL 5 BASIC19.26■□□□□ 0.67
ERCC4Q92889 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC19.26■□□□□ 0.67
ERCC4Q92889 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC19.26■□□□□ 0.67
ERCC4Q92889 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
ERCC4Q92889 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
ERCC4Q92889 TTBK2-208ENST00000622375 6891 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
ERCC4Q92889 PAUPAR-201ENST00000630360 2965 ntBASIC19.26■□□□□ 0.67
ERCC4Q92889 PROSER1-211ENST00000625998 5102 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
ERCC4Q92889 PLXNB3-201ENST00000361971 6146 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
ERCC4Q92889 NSUN5P1-202ENST00000421140 1535 ntBASIC19.25■□□□□ 0.67
ERCC4Q92889 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC19.25■□□□□ 0.67
ERCC4Q92889 NSUN5P2-203ENST00000457352 1529 ntBASIC19.25■□□□□ 0.67
ERCC4Q92889 DDX19B-204ENST00000451014 1608 ntTSL 2 BASIC19.25■□□□□ 0.67
ERCC4Q92889 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC19.25■□□□□ 0.67
ERCC4Q92889 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
ERCC4Q92889 ANTXRL-205ENST00000620264 2206 ntAPPRIS P2 TSL 5 BASIC19.25■□□□□ 0.67
ERCC4Q92889 AL512625.1-201ENST00000305709 2541 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
ERCC4Q92889 ATP6V0E2-201ENST00000421974 2605 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
ERCC4Q92889 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
ERCC4Q92889 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC19.25■□□□□ 0.67
ERCC4Q92889 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
ERCC4Q92889 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
ERCC4Q92889 TNKS-211ENST00000520408 1964 ntTSL 2 BASIC19.25■□□□□ 0.67
ERCC4Q92889 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
ERCC4Q92889 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
ERCC4Q92889 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
ERCC4Q92889 C18orf32-201ENST00000318240 1128 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
ERCC4Q92889 UBL5-201ENST00000358666 513 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
ERCC4Q92889 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
ERCC4Q92889 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC19.25■□□□□ 0.67
ERCC4Q92889 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
ERCC4Q92889 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
ERCC4Q92889 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC19.25■□□□□ 0.67
ERCC4Q92889 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
ERCC4Q92889 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC19.25■□□□□ 0.67
ERCC4Q92889 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC19.25■□□□□ 0.67
ERCC4Q92889 MPI-205ENST00000562606 1052 ntTSL 3 BASIC19.25■□□□□ 0.67
ERCC4Q92889 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC19.25■□□□□ 0.67
ERCC4Q92889 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC19.25■□□□□ 0.67
ERCC4Q92889 FAM109A-203ENST00000547838 2846 ntAPPRIS P3 TSL 4 BASIC19.25■□□□□ 0.67
ERCC4Q92889 MAPK7-201ENST00000299612 2715 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
ERCC4Q92889 CHN1-205ENST00000409900 2447 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
ERCC4Q92889 AL391005.1-201ENST00000623953 2435 ntBASIC19.25■□□□□ 0.67
ERCC4Q92889 GATA6-201ENST00000269216 3770 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
ERCC4Q92889 ZMYM3-203ENST00000373981 1841 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
ERCC4Q92889 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC19.25■□□□□ 0.67
ERCC4Q92889 STUM-201ENST00000366788 7705 ntAPPRIS P2 TSL 5 BASIC19.25■□□□□ 0.67
ERCC4Q92889 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
ERCC4Q92889 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
ERCC4Q92889 CDS1-201ENST00000295887 4461 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
ERCC4Q92889 TM9SF1-201ENST00000261789 2452 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
ERCC4Q92889 TPD52L2-201ENST00000217121 2362 ntTSL 2 BASIC19.25■□□□□ 0.67
ERCC4Q92889 NRG1-216ENST00000523079 2359 ntTSL 2 BASIC19.25■□□□□ 0.67
ERCC4Q92889 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC19.25■□□□□ 0.67
ERCC4Q92889 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC19.25■□□□□ 0.67
ERCC4Q92889 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC19.25■□□□□ 0.67
ERCC4Q92889 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC19.25■□□□□ 0.67
ERCC4Q92889 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC19.25■□□□□ 0.67
ERCC4Q92889 PPP1R21-206ENST00000449090 3049 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
ERCC4Q92889 GBA2-202ENST00000378094 3757 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
ERCC4Q92889 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
ERCC4Q92889 STK35-201ENST00000381482 6685 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
ERCC4Q92889 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
ERCC4Q92889 AL391256.1-201ENST00000443260 1855 ntBASIC19.24■□□□□ 0.67
ERCC4Q92889 GPC1-201ENST00000264039 3713 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
ERCC4Q92889 KL-201ENST00000380099 5006 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
ERCC4Q92889 GMIP-204ENST00000587238 2987 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
ERCC4Q92889 PMPCAP1-201ENST00000508114 1576 ntBASIC19.24■□□□□ 0.67
ERCC4Q92889 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
ERCC4Q92889 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC19.24■□□□□ 0.67
ERCC4Q92889 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
ERCC4Q92889 ISCU-203ENST00000431221 799 ntTSL 2 BASIC19.24■□□□□ 0.67
ERCC4Q92889 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC19.24■□□□□ 0.67
ERCC4Q92889 NUS1P1-201ENST00000446295 882 ntBASIC19.24■□□□□ 0.67
ERCC4Q92889 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC19.24■□□□□ 0.67
ERCC4Q92889 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC19.24■□□□□ 0.67
ERCC4Q92889 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC19.24■□□□□ 0.67
ERCC4Q92889 CIB2-208ENST00000560618 804 ntTSL 2 BASIC19.24■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 38.8 ms