Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 AL589739.1-201ENST00000607720 493 ntBASIC22.2■■□□□ 1.14
USP54Q70EL1 ALDH3B1-203ENST00000612297 1231 ntTSL 3 BASIC22.2■■□□□ 1.14
USP54Q70EL1 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC22.2■■□□□ 1.14
USP54Q70EL1 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
USP54Q70EL1 KAT7-213ENST00000510819 1769 ntTSL 2 BASIC22.19■■□□□ 1.14
USP54Q70EL1 GPAA1P2-202ENST00000606848 1787 ntBASIC22.19■■□□□ 1.14
USP54Q70EL1 PP12613-201ENST00000424958 2230 ntBASIC22.19■■□□□ 1.14
USP54Q70EL1 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
USP54Q70EL1 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC22.19■■□□□ 1.14
USP54Q70EL1 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC22.19■■□□□ 1.14
USP54Q70EL1 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC22.19■■□□□ 1.14
USP54Q70EL1 C2orf68-202ENST00000409734 1722 ntTSL 2 BASIC22.19■■□□□ 1.14
USP54Q70EL1 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC22.19■■□□□ 1.14
USP54Q70EL1 ZUFSP-201ENST00000368573 1225 ntTSL 5 BASIC22.19■■□□□ 1.14
USP54Q70EL1 ING1-204ENST00000375775 1074 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
USP54Q70EL1 CIB3-202ENST00000379859 467 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
USP54Q70EL1 LINC00229-201ENST00000443783 500 ntTSL 2 BASIC22.19■■□□□ 1.14
USP54Q70EL1 SLC8B1-206ENST00000549069 1058 ntTSL 2 BASIC22.19■■□□□ 1.14
USP54Q70EL1 AC024267.1-201ENST00000582320 895 ntBASIC22.19■■□□□ 1.14
USP54Q70EL1 LINC00207-204ENST00000605505 666 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
USP54Q70EL1 AL512625.3-203ENST00000445604 1602 ntTSL 5 BASIC22.19■■□□□ 1.14
USP54Q70EL1 NEFHP1-201ENST00000412845 2629 ntBASIC22.19■■□□□ 1.14
USP54Q70EL1 AKR7L-202ENST00000429712 1313 ntAPPRIS P5 TSL 1 (best) BASIC22.19■■□□□ 1.14
USP54Q70EL1 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC22.19■■□□□ 1.14
USP54Q70EL1 TMEM161A-206ENST00000587583 1654 ntTSL 5 BASIC22.19■■□□□ 1.14
USP54Q70EL1 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC22.19■■□□□ 1.14
USP54Q70EL1 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC22.19■■□□□ 1.14
USP54Q70EL1 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC22.18■■□□□ 1.14
USP54Q70EL1 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
USP54Q70EL1 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC22.18■■□□□ 1.14
USP54Q70EL1 RPS19-201ENST00000221975 500 ntTSL 3 BASIC22.18■■□□□ 1.14
USP54Q70EL1 HCST-201ENST00000246551 613 ntAPPRIS P3 TSL 1 (best) BASIC22.18■■□□□ 1.14
USP54Q70EL1 OR8S1-201ENST00000310194 1080 ntBASIC22.18■■□□□ 1.14
USP54Q70EL1 GPHB5-201ENST00000314140 393 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
USP54Q70EL1 ACRV1-201ENST00000315608 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC22.18■■□□□ 1.14
USP54Q70EL1 TOMM5-201ENST00000321301 751 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
USP54Q70EL1 U91328.1-201ENST00000437528 223 ntBASIC22.18■■□□□ 1.14
USP54Q70EL1 EEF1DP4-201ENST00000446006 880 ntBASIC22.18■■□□□ 1.14
USP54Q70EL1 NEIL2-207ENST00000528323 998 ntTSL 2 BASIC22.18■■□□□ 1.14
USP54Q70EL1 AKIP1-211ENST00000534506 576 ntTSL 3 BASIC22.18■■□□□ 1.14
USP54Q70EL1 AC138207.8-201ENST00000579692 739 ntTSL 3 BASIC22.18■■□□□ 1.14
USP54Q70EL1 C19orf70-206ENST00000590389 769 ntTSL 3 BASIC22.18■■□□□ 1.14
USP54Q70EL1 RPS19-202ENST00000593863 526 ntAPPRIS P1 TSL 3 BASIC22.18■■□□□ 1.14
USP54Q70EL1 TTC24-201ENST00000368236 2005 ntAPPRIS P1 TSL 5 BASIC22.18■■□□□ 1.14
USP54Q70EL1 DHRS1-201ENST00000288111 1480 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
USP54Q70EL1 TCP1-203ENST00000420894 1671 ntTSL 5 BASIC22.18■■□□□ 1.14
USP54Q70EL1 B3GNT8-201ENST00000321702 1874 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
USP54Q70EL1 IDH3G-212ENST00000619865 1339 ntTSL 5 BASIC22.18■■□□□ 1.14
USP54Q70EL1 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC22.18■■□□□ 1.14
USP54Q70EL1 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
USP54Q70EL1 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
USP54Q70EL1 CLN3-201ENST00000333496 1608 ntTSL 5 BASIC22.18■■□□□ 1.14
USP54Q70EL1 AC068880.1-201ENST00000507289 2297 ntBASIC22.17■■□□□ 1.14
USP54Q70EL1 DKKL1-201ENST00000221498 1222 ntAPPRIS P2 TSL 1 (best) BASIC22.17■■□□□ 1.14
USP54Q70EL1 UBB-201ENST00000302182 1225 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
USP54Q70EL1 LINC01116-202ENST00000339037 838 ntTSL 3 BASIC22.17■■□□□ 1.14
USP54Q70EL1 AQP7-204ENST00000379506 1062 ntTSL 2 BASIC22.17■■□□□ 1.14
USP54Q70EL1 MAGEC1-202ENST00000406005 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC22.17■■□□□ 1.14
USP54Q70EL1 RAB1B-202ENST00000527397 991 ntTSL 3 BASIC22.17■■□□□ 1.14
USP54Q70EL1 AC091544.3-201ENST00000556424 531 ntTSL 2 BASIC22.17■■□□□ 1.14
USP54Q70EL1 AC004233.3-201ENST00000607794 1269 ntBASIC22.17■■□□□ 1.14
USP54Q70EL1 HDDC2-203ENST00000608284 538 ntTSL 3 BASIC22.17■■□□□ 1.14
USP54Q70EL1 HAS3-205ENST00000569188 2170 ntAPPRIS P1 TSL 2 BASIC22.17■■□□□ 1.14
USP54Q70EL1 CLCNKB-204ENST00000619181 1544 ntTSL 5 BASIC22.17■■□□□ 1.14
USP54Q70EL1 GFOD2-203ENST00000602377 1991 ntTSL 4 BASIC22.17■■□□□ 1.14
USP54Q70EL1 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC22.17■■□□□ 1.14
USP54Q70EL1 AC092068.3-201ENST00000587894 2016 ntBASIC22.17■■□□□ 1.14
USP54Q70EL1 SLC7A15P-201ENST00000424028 1363 ntBASIC22.17■■□□□ 1.14
USP54Q70EL1 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC22.17■■□□□ 1.14
USP54Q70EL1 SNED1-202ENST00000342631 1930 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
USP54Q70EL1 CCKAR-201ENST00000295589 1720 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
USP54Q70EL1 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC22.17■■□□□ 1.14
USP54Q70EL1 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
USP54Q70EL1 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC22.17■■□□□ 1.14
USP54Q70EL1 AC079776.1-201ENST00000401540 1152 ntBASIC22.17■■□□□ 1.14
USP54Q70EL1 AC114501.2-201ENST00000439631 535 ntBASIC22.17■■□□□ 1.14
USP54Q70EL1 CD4-210ENST00000541982 1187 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
USP54Q70EL1 MAX-210ENST00000555419 765 ntTSL 5 BASIC22.17■■□□□ 1.14
USP54Q70EL1 IER3IP1-202ENST00000639845 832 ntTSL 2 BASIC22.17■■□□□ 1.14
USP54Q70EL1 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC22.17■■□□□ 1.14
USP54Q70EL1 MAGEA2-201ENST00000595583 1830 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
USP54Q70EL1 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC22.16■■□□□ 1.14
USP54Q70EL1 BCL2L2-PABPN1-203ENST00000557008 1366 ntAPPRIS P1 TSL 5 BASIC22.16■■□□□ 1.14
USP54Q70EL1 WDR45-201ENST00000322995 1444 ntTSL 5 BASIC22.16■■□□□ 1.14
USP54Q70EL1 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC22.16■■□□□ 1.14
USP54Q70EL1 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC22.16■■□□□ 1.14
USP54Q70EL1 EVA1A-205ENST00000410113 1747 ntAPPRIS P2 TSL 3 BASIC22.16■■□□□ 1.14
USP54Q70EL1 NFIC-203ENST00000443272 1716 ntAPPRIS P1 TSL 2 BASIC22.16■■□□□ 1.14
USP54Q70EL1 AL512652.2-201ENST00000625156 1716 ntBASIC22.16■■□□□ 1.14
USP54Q70EL1 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC22.16■■□□□ 1.14
USP54Q70EL1 TNRC18-202ENST00000399434 1459 ntTSL 2 BASIC22.16■■□□□ 1.14
USP54Q70EL1 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC22.16■■□□□ 1.14
USP54Q70EL1 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC22.16■■□□□ 1.14
USP54Q70EL1 IMPDH1P4-201ENST00000445028 1534 ntBASIC22.16■■□□□ 1.14
USP54Q70EL1 NTMT1-201ENST00000372480 852 ntAPPRIS P1 TSL 3 BASIC22.16■■□□□ 1.14
USP54Q70EL1 RTN4RL2-202ENST00000395120 582 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
USP54Q70EL1 LEPROTL1-204ENST00000518192 847 ntTSL 3 BASIC22.16■■□□□ 1.14
USP54Q70EL1 IFITM2-204ENST00000533141 588 ntAPPRIS ALT2 TSL 4 BASIC22.16■■□□□ 1.14
USP54Q70EL1 5S_rRNA.22-201ENST00000614916 106 ntBASIC22.16■■□□□ 1.14
USP54Q70EL1 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
Retrieved 100 of 98,524 protein–RNA pairs in 42.6 ms