Protein–RNA interactions for Protein: Q5TC82

RC3H1, Roquin-1, humanhuman

Known RBP Predictions only

Length 1,133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RC3H1Q5TC82 DUSP13-214ENST00000607131 1019 ntAPPRIS P3 TSL 1 (best) BASIC21.07■□□□□ 0.96
RC3H1Q5TC82 AC017083.2-201ENST00000608069 979 ntBASIC21.07■□□□□ 0.96
RC3H1Q5TC82 AC244517.11-204ENST00000624424 760 ntTSL 5 BASIC21.07■□□□□ 0.96
RC3H1Q5TC82 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC21.07■□□□□ 0.96
RC3H1Q5TC82 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
RC3H1Q5TC82 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC21.07■□□□□ 0.96
RC3H1Q5TC82 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC21.07■□□□□ 0.96
RC3H1Q5TC82 AC005622.1-202ENST00000637093 1543 ntTSL 5 BASIC21.07■□□□□ 0.96
RC3H1Q5TC82 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC21.07■□□□□ 0.96
RC3H1Q5TC82 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC21.07■□□□□ 0.96
RC3H1Q5TC82 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC21.07■□□□□ 0.96
RC3H1Q5TC82 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
RC3H1Q5TC82 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
RC3H1Q5TC82 DNAJC7-201ENST00000316603 1468 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
RC3H1Q5TC82 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC21.06■□□□□ 0.96
RC3H1Q5TC82 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
RC3H1Q5TC82 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
RC3H1Q5TC82 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC21.06■□□□□ 0.96
RC3H1Q5TC82 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
RC3H1Q5TC82 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
RC3H1Q5TC82 REEP2-211ENST00000613650 1944 ntTSL 5 BASIC21.06■□□□□ 0.96
RC3H1Q5TC82 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
RC3H1Q5TC82 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
RC3H1Q5TC82 MRPS22-212ENST00000495075 1547 ntAPPRIS P2 TSL 1 (best) BASIC21.06■□□□□ 0.96
RC3H1Q5TC82 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
RC3H1Q5TC82 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
RC3H1Q5TC82 CMA1-201ENST00000206446 633 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
RC3H1Q5TC82 IGHV3-23-201ENST00000390609 432 ntAPPRIS P1 BASIC21.06■□□□□ 0.96
RC3H1Q5TC82 AC114501.2-201ENST00000439631 535 ntBASIC21.06■□□□□ 0.96
RC3H1Q5TC82 LINC00229-201ENST00000443783 500 ntTSL 2 BASIC21.06■□□□□ 0.96
RC3H1Q5TC82 ACA64.2-201ENST00000459014 129 ntBASIC21.06■□□□□ 0.96
RC3H1Q5TC82 AC011495.1-201ENST00000498085 584 ntBASIC21.06■□□□□ 0.96
RC3H1Q5TC82 TMEM161B-AS1-212ENST00000513011 833 ntTSL 3 BASIC21.06■□□□□ 0.96
RC3H1Q5TC82 DOC2GP-202ENST00000514950 1163 ntBASIC21.06■□□□□ 0.96
RC3H1Q5TC82 AP001995.1-201ENST00000531784 1157 ntTSL 4 BASIC21.06■□□□□ 0.96
RC3H1Q5TC82 OBP2A-206ENST00000539850 914 ntAPPRIS P1 TSL 5 BASIC21.06■□□□□ 0.96
RC3H1Q5TC82 AC005520.2-201ENST00000556194 573 ntTSL 2 BASIC21.06■□□□□ 0.96
RC3H1Q5TC82 ARL16-202ENST00000570561 768 ntTSL 2 BASIC21.06■□□□□ 0.96
RC3H1Q5TC82 AC132938.2-201ENST00000579188 680 ntBASIC21.06■□□□□ 0.96
RC3H1Q5TC82 CREB3L2-208ENST00000620715 1053 ntTSL 5 BASIC21.06■□□□□ 0.96
RC3H1Q5TC82 AL591163.1-201ENST00000641757 987 ntBASIC21.06■□□□□ 0.96
RC3H1Q5TC82 AL023806.1-201ENST00000603994 1649 ntBASIC21.06■□□□□ 0.96
RC3H1Q5TC82 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
RC3H1Q5TC82 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
RC3H1Q5TC82 LIMS2-217ENST00000545738 1730 ntTSL 5 BASIC21.06■□□□□ 0.96
RC3H1Q5TC82 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
RC3H1Q5TC82 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC21.06■□□□□ 0.96
RC3H1Q5TC82 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC21.06■□□□□ 0.96
RC3H1Q5TC82 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC21.06■□□□□ 0.96
RC3H1Q5TC82 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
RC3H1Q5TC82 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC21.05■□□□□ 0.96
RC3H1Q5TC82 SHISA5-219ENST00000612611 1677 ntTSL 5 BASIC21.05■□□□□ 0.96
RC3H1Q5TC82 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
RC3H1Q5TC82 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
RC3H1Q5TC82 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
RC3H1Q5TC82 PRRG2-201ENST00000246794 1404 ntAPPRIS P1 TSL 2 BASIC21.05■□□□□ 0.96
RC3H1Q5TC82 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
RC3H1Q5TC82 KRT84-201ENST00000257951 2092 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
RC3H1Q5TC82 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
RC3H1Q5TC82 ACOT7-204ENST00000377855 1614 ntAPPRIS P4 TSL 1 (best) BASIC21.05■□□□□ 0.96
RC3H1Q5TC82 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
RC3H1Q5TC82 EBI3-201ENST00000221847 1186 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
RC3H1Q5TC82 SPDYE19P-201ENST00000338590 713 ntBASIC21.05■□□□□ 0.96
RC3H1Q5TC82 SLC18B1-202ENST00000367918 472 ntTSL 5 BASIC21.05■□□□□ 0.96
RC3H1Q5TC82 ING1-204ENST00000375775 1074 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
RC3H1Q5TC82 MACROD2-AS1-201ENST00000439451 1230 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
RC3H1Q5TC82 ASF1B-202ENST00000474890 765 ntTSL 2 BASIC21.05■□□□□ 0.96
RC3H1Q5TC82 RN7SL618P-201ENST00000477850 296 ntBASIC21.05■□□□□ 0.96
RC3H1Q5TC82 LINC01605-204ENST00000522718 1093 ntTSL 3 BASIC21.05■□□□□ 0.96
RC3H1Q5TC82 DRAP1-208ENST00000532933 751 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
RC3H1Q5TC82 AP001107.3-201ENST00000534065 544 ntTSL 4 BASIC21.05■□□□□ 0.96
RC3H1Q5TC82 ATF7-204ENST00000548118 774 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
RC3H1Q5TC82 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC21.05■□□□□ 0.96
RC3H1Q5TC82 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
RC3H1Q5TC82 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC21.05■□□□□ 0.96
RC3H1Q5TC82 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
RC3H1Q5TC82 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC21.05■□□□□ 0.96
RC3H1Q5TC82 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC21.05■□□□□ 0.96
RC3H1Q5TC82 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC21.04■□□□□ 0.96
RC3H1Q5TC82 FKBPL-201ENST00000375156 1345 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
RC3H1Q5TC82 HOXB5-201ENST00000239151 2041 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
RC3H1Q5TC82 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
RC3H1Q5TC82 PXMP4-202ENST00000344022 989 ntTSL 2 BASIC21.04■□□□□ 0.96
RC3H1Q5TC82 AQP7-204ENST00000379506 1062 ntTSL 2 BASIC21.04■□□□□ 0.96
RC3H1Q5TC82 CCL25-203ENST00000390669 924 ntAPPRIS P3 TSL 1 (best) BASIC21.04■□□□□ 0.96
RC3H1Q5TC82 MXI1-205ENST00000393134 889 ntTSL 2 BASIC21.04■□□□□ 0.96
RC3H1Q5TC82 CC2D2B-203ENST00000423344 1241 ntTSL 2 BASIC21.04■□□□□ 0.96
RC3H1Q5TC82 TEX48-201ENST00000436752 708 ntAPPRIS P1 TSL 5 BASIC21.04■□□□□ 0.96
RC3H1Q5TC82 HMGB2-203ENST00000446922 1175 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
RC3H1Q5TC82 AL606760.2-202ENST00000452466 524 ntTSL 5 BASIC21.04■□□□□ 0.96
RC3H1Q5TC82 AC099552.3-201ENST00000454149 367 ntTSL 3 BASIC21.04■□□□□ 0.96
RC3H1Q5TC82 LCN10-203ENST00000474369 564 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
RC3H1Q5TC82 PIMREG-202ENST00000570337 891 ntTSL 5 BASIC21.04■□□□□ 0.96
RC3H1Q5TC82 PIMREG-203ENST00000571373 1002 ntTSL 3 BASIC21.04■□□□□ 0.96
RC3H1Q5TC82 SLC9A3-AS1-206ENST00000607005 435 ntTSL 3 BASIC21.04■□□□□ 0.96
RC3H1Q5TC82 TEX48-202ENST00000612244 662 ntTSL 3 BASIC21.04■□□□□ 0.96
RC3H1Q5TC82 PHOSPHO2-207ENST00000616524 1253 ntAPPRIS P1 TSL 3 BASIC21.04■□□□□ 0.96
RC3H1Q5TC82 CREB3L3-204ENST00000602147 1382 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
RC3H1Q5TC82 CHMP5-201ENST00000223500 1477 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
RC3H1Q5TC82 SH2B1-206ENST00000545570 1488 ntTSL 2 BASIC21.04■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 36.8 ms