Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC15.98■□□□□ 0.15
RFX3P48380 IRF8-202ENST00000562492 946 ntTSL 3 BASIC15.98■□□□□ 0.15
RFX3P48380 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC15.98■□□□□ 0.15
RFX3P48380 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC15.98■□□□□ 0.15
RFX3P48380 PCDHGC5-202ENST00000610789 2763 ntAPPRIS ALT2 BASIC15.98■□□□□ 0.15
RFX3P48380 IRF5-214ENST00000613821 595 ntTSL 5 BASIC15.98■□□□□ 0.15
RFX3P48380 AL355877.3-201ENST00000622820 899 ntBASIC15.98■□□□□ 0.15
RFX3P48380 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC15.98■□□□□ 0.15
RFX3P48380 MCF2L2-201ENST00000328913 4980 ntAPPRIS P2 TSL 5 BASIC15.98■□□□□ 0.15
RFX3P48380 FBXO18-203ENST00000397269 3640 ntTSL 5 BASIC15.98■□□□□ 0.15
RFX3P48380 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
RFX3P48380 C17orf113-201ENST00000587304 3746 ntAPPRIS P1 TSL 5 BASIC15.98■□□□□ 0.15
RFX3P48380 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC15.98■□□□□ 0.15
RFX3P48380 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
RFX3P48380 PAN3-AS1-201ENST00000563843 1351 ntBASIC15.98■□□□□ 0.15
RFX3P48380 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC15.98■□□□□ 0.15
RFX3P48380 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
RFX3P48380 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC15.98■□□□□ 0.15
RFX3P48380 RHBDF1P1-201ENST00000427504 1941 ntBASIC15.98■□□□□ 0.15
RFX3P48380 MICALL1-201ENST00000215957 4710 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
RFX3P48380 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC15.97■□□□□ 0.15
RFX3P48380 UNC119B-201ENST00000344651 4404 ntAPPRIS P1 TSL 2 BASIC15.97■□□□□ 0.15
RFX3P48380 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
RFX3P48380 JPH4-202ENST00000397118 4386 ntAPPRIS P2 TSL 1 (best) BASIC15.97■□□□□ 0.15
RFX3P48380 BACE1-211ENST00000528053 4083 ntTSL 5 BASIC15.97■□□□□ 0.15
RFX3P48380 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC15.97■□□□□ 0.15
RFX3P48380 GRM5-205ENST00000455756 7927 ntAPPRIS P3 TSL 2 BASIC15.97■□□□□ 0.15
RFX3P48380 JRK-209ENST00000612905 9124 ntAPPRIS P4 TSL 2 BASIC15.97■□□□□ 0.15
RFX3P48380 GNS-201ENST00000258145 5122 ntAPPRIS P2 TSL 1 (best) BASIC15.97■□□□□ 0.15
RFX3P48380 ALOX12-201ENST00000251535 2358 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
RFX3P48380 POLR3D-202ENST00000397802 5494 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
RFX3P48380 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC15.97■□□□□ 0.15
RFX3P48380 EMBP1-201ENST00000458200 901 ntBASIC15.97■□□□□ 0.15
RFX3P48380 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC15.97■□□□□ 0.15
RFX3P48380 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
RFX3P48380 SART3-203ENST00000546611 1184 ntBASIC15.97■□□□□ 0.15
RFX3P48380 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
RFX3P48380 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC15.97■□□□□ 0.15
RFX3P48380 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
RFX3P48380 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
RFX3P48380 AL139288.1-201ENST00000623748 933 ntBASIC15.97■□□□□ 0.15
RFX3P48380 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
RFX3P48380 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
RFX3P48380 AC063926.3-201ENST00000624734 5658 ntBASIC15.97■□□□□ 0.15
RFX3P48380 TNFRSF13C-201ENST00000291232 3944 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
RFX3P48380 FNDC5-201ENST00000373471 2732 ntAPPRIS ALT2 TSL 2 BASIC15.97■□□□□ 0.15
RFX3P48380 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC15.97■□□□□ 0.15
RFX3P48380 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC15.97■□□□□ 0.15
RFX3P48380 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
RFX3P48380 RPAIN-203ENST00000381209 1535 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
RFX3P48380 ELAVL2-208ENST00000544538 3789 ntAPPRIS P3 TSL 5 BASIC15.97■□□□□ 0.15
RFX3P48380 PML-206ENST00000395135 2199 ntAPPRIS ALT2 TSL 1 (best) BASIC15.97■□□□□ 0.15
RFX3P48380 SIKE1-203ENST00000369528 5506 ntAPPRIS ALT1 TSL 1 (best) BASIC15.97■□□□□ 0.15
RFX3P48380 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC15.97■□□□□ 0.15
RFX3P48380 PTPRN2-201ENST00000389413 4723 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
RFX3P48380 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC15.97■□□□□ 0.15
RFX3P48380 MAP3K1-201ENST00000399503 7011 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
RFX3P48380 COL17A1-202ENST00000369733 5488 ntAPPRIS ALT2 TSL 5 BASIC15.97■□□□□ 0.15
RFX3P48380 PRRT4-201ENST00000446477 3544 ntAPPRIS P1 TSL 5 BASIC15.97■□□□□ 0.15
RFX3P48380 TMC7-201ENST00000304381 3640 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
RFX3P48380 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
RFX3P48380 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC15.96■□□□□ 0.15
RFX3P48380 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC15.96■□□□□ 0.15
RFX3P48380 SYNM-201ENST00000328642 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.15
RFX3P48380 CERK-201ENST00000216264 4450 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
RFX3P48380 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
RFX3P48380 SPATA18-202ENST00000419395 2816 ntTSL 2 BASIC15.96■□□□□ 0.15
RFX3P48380 HSF5-201ENST00000323777 4094 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
RFX3P48380 AC126755.1-201ENST00000525846 6405 ntBASIC15.96■□□□□ 0.15
RFX3P48380 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
RFX3P48380 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC15.96■□□□□ 0.15
RFX3P48380 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC15.96■□□□□ 0.15
RFX3P48380 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
RFX3P48380 SIGLEC16-201ENST00000599858 1437 ntBASIC15.96■□□□□ 0.15
RFX3P48380 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC15.96■□□□□ 0.15
RFX3P48380 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
RFX3P48380 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC15.96■□□□□ 0.15
RFX3P48380 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
RFX3P48380 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC15.96■□□□□ 0.15
RFX3P48380 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC15.96■□□□□ 0.15
RFX3P48380 HIST2H3DP1-201ENST00000401004 416 ntBASIC15.96■□□□□ 0.15
RFX3P48380 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC15.96■□□□□ 0.15
RFX3P48380 FGFR3P6-201ENST00000457012 610 ntBASIC15.96■□□□□ 0.15
RFX3P48380 SCARNA2-201ENST00000458748 420 ntBASIC15.96■□□□□ 0.15
RFX3P48380 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.15
RFX3P48380 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC15.96■□□□□ 0.15
RFX3P48380 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC15.96■□□□□ 0.15
RFX3P48380 MSRA-206ENST00000521209 814 ntTSL 3 BASIC15.96■□□□□ 0.15
RFX3P48380 TOLLIP-AS1-201ENST00000530897 939 ntBASIC15.96■□□□□ 0.15
RFX3P48380 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC15.96■□□□□ 0.15
RFX3P48380 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
RFX3P48380 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC15.96■□□□□ 0.15
RFX3P48380 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC15.96■□□□□ 0.15
RFX3P48380 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC15.96■□□□□ 0.15
RFX3P48380 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC15.96■□□□□ 0.15
RFX3P48380 AL022326.1-202ENST00000641533 845 ntBASIC15.96■□□□□ 0.15
RFX3P48380 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
RFX3P48380 CES3-203ENST00000543856 3178 ntTSL 2 BASIC15.96■□□□□ 0.15
RFX3P48380 RNF168-201ENST00000318037 5347 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
RFX3P48380 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 27.4 ms