Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 RAB33B-201ENST00000305626 4562 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
HNF4AP41235 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC16.47■□□□□ 0.23
HNF4AP41235 FBXO24-206ENST00000468962 1901 ntTSL 2 BASIC16.47■□□□□ 0.23
HNF4AP41235 MAP3K9-201ENST00000381250 4025 ntAPPRIS ALT2 TSL 5 BASIC16.47■□□□□ 0.23
HNF4AP41235 NETO2-202ENST00000562435 7481 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
HNF4AP41235 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
HNF4AP41235 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC16.47■□□□□ 0.23
HNF4AP41235 RAB17-203ENST00000409576 466 ntTSL 3 BASIC16.47■□□□□ 0.23
HNF4AP41235 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
HNF4AP41235 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
HNF4AP41235 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC16.47■□□□□ 0.23
HNF4AP41235 FAAHP1-202ENST00000446499 1238 ntBASIC16.47■□□□□ 0.23
HNF4AP41235 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
HNF4AP41235 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC16.47■□□□□ 0.23
HNF4AP41235 AC025062.2-201ENST00000605477 670 ntBASIC16.47■□□□□ 0.23
HNF4AP41235 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC16.47■□□□□ 0.23
HNF4AP41235 AC148477.8-201ENST00000624298 468 ntBASIC16.47■□□□□ 0.23
HNF4AP41235 SUFU-202ENST00000369902 5001 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
HNF4AP41235 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC16.47■□□□□ 0.23
HNF4AP41235 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC16.47■□□□□ 0.23
HNF4AP41235 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
HNF4AP41235 MICA-209ENST00000449934 1386 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
HNF4AP41235 PITPNM1-201ENST00000356404 4225 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
HNF4AP41235 FAM208B-201ENST00000328090 8626 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
HNF4AP41235 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC16.47■□□□□ 0.23
HNF4AP41235 PDE8B-201ENST00000264917 5956 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
HNF4AP41235 CCNI2-204ENST00000614847 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
HNF4AP41235 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC16.47■□□□□ 0.23
HNF4AP41235 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
HNF4AP41235 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC16.46■□□□□ 0.23
HNF4AP41235 RECQL4-210ENST00000621189 3896 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
HNF4AP41235 HNRNPRP1-201ENST00000453465 1695 ntBASIC16.46■□□□□ 0.23
HNF4AP41235 AGGF1P2-201ENST00000426656 2106 ntBASIC16.46■□□□□ 0.23
HNF4AP41235 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC16.46■□□□□ 0.23
HNF4AP41235 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.23
HNF4AP41235 WBP2-204ENST00000585462 1895 ntTSL 3 BASIC16.46■□□□□ 0.23
HNF4AP41235 NPRL3-201ENST00000399953 2784 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
HNF4AP41235 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC16.46■□□□□ 0.23
HNF4AP41235 RUNX2-204ENST00000371438 5698 ntAPPRIS P4 TSL 5 BASIC16.46■□□□□ 0.23
HNF4AP41235 PPM1D-201ENST00000305921 4778 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
HNF4AP41235 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC16.46■□□□□ 0.23
HNF4AP41235 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
HNF4AP41235 SENP6-205ENST00000447266 6501 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
HNF4AP41235 LMBR1-202ENST00000359422 4727 ntTSL 5 BASIC16.46■□□□□ 0.23
HNF4AP41235 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
HNF4AP41235 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
HNF4AP41235 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC16.46■□□□□ 0.23
HNF4AP41235 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC16.46■□□□□ 0.23
HNF4AP41235 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
HNF4AP41235 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC16.46■□□□□ 0.23
HNF4AP41235 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC16.46■□□□□ 0.23
HNF4AP41235 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
HNF4AP41235 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC16.46■□□□□ 0.23
HNF4AP41235 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC16.46■□□□□ 0.23
HNF4AP41235 AC139887.3-201ENST00000568585 713 ntBASIC16.46■□□□□ 0.23
HNF4AP41235 PNMT-203ENST00000581428 677 ntTSL 2 BASIC16.46■□□□□ 0.23
HNF4AP41235 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
HNF4AP41235 CALM3-211ENST00000598871 561 ntTSL 4 BASIC16.46■□□□□ 0.23
HNF4AP41235 AL139424.1-201ENST00000607572 797 ntBASIC16.46■□□□□ 0.23
HNF4AP41235 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC16.46■□□□□ 0.23
HNF4AP41235 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
HNF4AP41235 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
HNF4AP41235 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC16.46■□□□□ 0.23
HNF4AP41235 AC018695.7-201ENST00000624587 2492 ntBASIC16.46■□□□□ 0.23
HNF4AP41235 AL021920.2-201ENST00000624828 1351 ntBASIC16.46■□□□□ 0.23
HNF4AP41235 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
HNF4AP41235 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC16.46■□□□□ 0.23
HNF4AP41235 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
HNF4AP41235 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC16.46■□□□□ 0.23
HNF4AP41235 XPO5-201ENST00000265351 5364 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
HNF4AP41235 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
HNF4AP41235 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC16.46■□□□□ 0.22
HNF4AP41235 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC16.46■□□□□ 0.22
HNF4AP41235 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC16.46■□□□□ 0.22
HNF4AP41235 EVPLL-201ENST00000399134 2095 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
HNF4AP41235 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
HNF4AP41235 PRAG1-201ENST00000615670 4903 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
HNF4AP41235 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
HNF4AP41235 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC16.45■□□□□ 0.22
HNF4AP41235 CDS1-201ENST00000295887 4461 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
HNF4AP41235 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC16.45■□□□□ 0.22
HNF4AP41235 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
HNF4AP41235 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
HNF4AP41235 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
HNF4AP41235 AC131160.1-201ENST00000639401 3058 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
HNF4AP41235 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
HNF4AP41235 KIF5C-201ENST00000435030 6931 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
HNF4AP41235 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
HNF4AP41235 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
HNF4AP41235 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
HNF4AP41235 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
HNF4AP41235 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC16.45■□□□□ 0.22
HNF4AP41235 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
HNF4AP41235 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC16.45■□□□□ 0.22
HNF4AP41235 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC16.45■□□□□ 0.22
HNF4AP41235 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
HNF4AP41235 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC16.45■□□□□ 0.22
HNF4AP41235 AF186996.4-201ENST00000467186 377 ntBASIC16.45■□□□□ 0.22
HNF4AP41235 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC16.45■□□□□ 0.22
HNF4AP41235 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC16.45■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 69.7 ms