Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 AL162274.1-201ENST00000617191 1098 ntBASIC21.99■■□□□ 1.11
COL18A1P39060 AC002310.1-201ENST00000457283 1445 ntTSL 2 BASIC21.99■■□□□ 1.11
COL18A1P39060 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC21.99■■□□□ 1.11
COL18A1P39060 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
COL18A1P39060 AC006277.1-201ENST00000624348 1610 ntBASIC21.99■■□□□ 1.11
COL18A1P39060 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC21.99■■□□□ 1.11
COL18A1P39060 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC21.99■■□□□ 1.11
COL18A1P39060 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
COL18A1P39060 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC21.99■■□□□ 1.11
COL18A1P39060 FTH1-201ENST00000273550 1229 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
COL18A1P39060 CTHRC1-201ENST00000330295 1271 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
COL18A1P39060 MRPS6-201ENST00000399312 990 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
COL18A1P39060 AC087294.1-202ENST00000439136 487 ntTSL 3 BASIC21.99■■□□□ 1.11
COL18A1P39060 AC073130.2-202ENST00000444244 842 ntTSL 3 BASIC21.99■■□□□ 1.11
COL18A1P39060 FTH1-202ENST00000526640 786 ntTSL 2 BASIC21.99■■□□□ 1.11
COL18A1P39060 AP001107.3-201ENST00000534065 544 ntTSL 4 BASIC21.99■■□□□ 1.11
COL18A1P39060 AC129507.3-201ENST00000571512 913 ntTSL 2 BASIC21.99■■□□□ 1.11
COL18A1P39060 AC087294.1-201ENST00000580291 1152 ntTSL 2 BASIC21.99■■□□□ 1.11
COL18A1P39060 SRD5A3P1-201ENST00000603021 949 ntBASIC21.99■■□□□ 1.11
COL18A1P39060 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
COL18A1P39060 IMPDH1P4-201ENST00000445028 1534 ntBASIC21.99■■□□□ 1.11
COL18A1P39060 AC005622.1-202ENST00000637093 1543 ntTSL 5 BASIC21.99■■□□□ 1.11
COL18A1P39060 CD14-202ENST00000401743 1648 ntAPPRIS P1 TSL 3 BASIC21.99■■□□□ 1.11
COL18A1P39060 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC21.99■■□□□ 1.11
COL18A1P39060 LINC02012-201ENST00000608206 1725 ntBASIC21.99■■□□□ 1.11
COL18A1P39060 BIN3-201ENST00000276416 1835 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
COL18A1P39060 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC21.99■■□□□ 1.11
COL18A1P39060 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
COL18A1P39060 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC21.98■■□□□ 1.11
COL18A1P39060 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
COL18A1P39060 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
COL18A1P39060 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
COL18A1P39060 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC21.98■■□□□ 1.11
COL18A1P39060 ACOT9-201ENST00000336430 1675 ntAPPRIS P3 TSL 1 (best) BASIC21.98■■□□□ 1.11
COL18A1P39060 MFNG-201ENST00000356998 2088 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
COL18A1P39060 DPM2-202ENST00000373110 738 ntTSL 2 BASIC21.98■■□□□ 1.11
COL18A1P39060 CD164L2-203ENST00000374030 993 ntAPPRIS ALT1 TSL 5 BASIC21.98■■□□□ 1.11
COL18A1P39060 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC21.98■■□□□ 1.11
COL18A1P39060 MTFR2-203ENST00000420702 1793 ntAPPRIS P2 TSL 2 BASIC21.98■■□□□ 1.11
COL18A1P39060 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
COL18A1P39060 AC006001.2-201ENST00000448096 393 ntTSL 3 BASIC21.98■■□□□ 1.11
COL18A1P39060 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
COL18A1P39060 AL161781.2-201ENST00000509911 739 ntTSL 2 BASIC21.98■■□□□ 1.11
COL18A1P39060 SERF1B-208ENST00000515588 792 ntTSL 2 BASIC21.98■■□□□ 1.11
COL18A1P39060 GLI4-203ENST00000517468 963 ntTSL 5 BASIC21.98■■□□□ 1.11
COL18A1P39060 CTSB-220ENST00000531089 1436 ntAPPRIS P1 TSL 5 BASIC21.98■■□□□ 1.11
COL18A1P39060 AC079296.1-201ENST00000531592 560 ntTSL 3 BASIC21.98■■□□□ 1.11
COL18A1P39060 LINC02298-201ENST00000546968 965 ntTSL 5 BASIC21.98■■□□□ 1.11
COL18A1P39060 AC008969.1-205ENST00000553254 876 ntTSL 2 BASIC21.98■■□□□ 1.11
COL18A1P39060 CLCNKB-204ENST00000619181 1544 ntTSL 5 BASIC21.98■■□□□ 1.11
COL18A1P39060 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC21.98■■□□□ 1.11
COL18A1P39060 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
COL18A1P39060 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
COL18A1P39060 ELP4-219ENST00000639878 1583 ntTSL 5 BASIC21.97■■□□□ 1.11
COL18A1P39060 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
COL18A1P39060 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC21.97■■□□□ 1.11
COL18A1P39060 KRT8P39-201ENST00000396270 1433 ntBASIC21.97■■□□□ 1.11
COL18A1P39060 PRMT1-202ENST00000454376 1327 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
COL18A1P39060 LGALS2-201ENST00000215886 591 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
COL18A1P39060 SCN4B-204ENST00000529878 566 ntTSL 4 BASIC21.97■■□□□ 1.11
COL18A1P39060 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
COL18A1P39060 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
COL18A1P39060 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
COL18A1P39060 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC21.97■■□□□ 1.11
COL18A1P39060 FAM49B-224ENST00000522941 1700 ntTSL 5 BASIC21.97■■□□□ 1.11
COL18A1P39060 NCALD-217ENST00000521599 2289 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
COL18A1P39060 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC21.97■■□□□ 1.11
COL18A1P39060 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
COL18A1P39060 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
COL18A1P39060 VMO1-203ENST00000416307 712 ntTSL 2 BASIC21.97■■□□□ 1.11
COL18A1P39060 AC092910.3-201ENST00000484076 969 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
COL18A1P39060 C3orf67-212ENST00000491845 832 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
COL18A1P39060 LINC02356-202ENST00000552663 314 ntTSL 3 BASIC21.97■■□□□ 1.11
COL18A1P39060 PDCD6-212ENST00000614778 1050 ntTSL 2 BASIC21.97■■□□□ 1.11
COL18A1P39060 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
COL18A1P39060 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC21.97■■□□□ 1.11
COL18A1P39060 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
COL18A1P39060 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC21.96■■□□□ 1.11
COL18A1P39060 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC21.96■■□□□ 1.11
COL18A1P39060 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
COL18A1P39060 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC21.96■■□□□ 1.11
COL18A1P39060 ASNA1-204ENST00000591090 1368 ntAPPRIS P1 TSL 5 BASIC21.96■■□□□ 1.11
COL18A1P39060 CSHL1-204ENST00000392824 823 ntAPPRIS ALT1 TSL 1 (best) BASIC21.96■■□□□ 1.11
COL18A1P39060 IFNL3-201ENST00000413851 656 ntAPPRIS P2 TSL 1 (best) BASIC21.96■■□□□ 1.11
COL18A1P39060 GS1-24F4.2-201ENST00000500823 1110 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
COL18A1P39060 DOC2GP-202ENST00000514950 1163 ntBASIC21.96■■□□□ 1.11
COL18A1P39060 ELOF1-206ENST00000590700 585 ntAPPRIS P1 TSL 3 BASIC21.96■■□□□ 1.11
COL18A1P39060 AC008770.3-202ENST00000591944 567 ntTSL 4 BASIC21.96■■□□□ 1.11
COL18A1P39060 LINC00237-203ENST00000593272 630 ntTSL 4 BASIC21.96■■□□□ 1.11
COL18A1P39060 AC004461.2-201ENST00000629517 803 ntBASIC21.96■■□□□ 1.11
COL18A1P39060 AL033527.4-201ENST00000641026 673 ntBASIC21.96■■□□□ 1.11
COL18A1P39060 OLA1-202ENST00000344357 1656 ntTSL 2 BASIC21.96■■□□□ 1.11
COL18A1P39060 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC21.96■■□□□ 1.11
COL18A1P39060 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC21.96■■□□□ 1.11
COL18A1P39060 FKBP6-202ENST00000413573 1507 ntTSL 5 BASIC21.96■■□□□ 1.11
COL18A1P39060 AC012414.7-201ENST00000621235 1507 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
COL18A1P39060 PRRG2-201ENST00000246794 1404 ntAPPRIS P1 TSL 2 BASIC21.95■■□□□ 1.11
COL18A1P39060 RBM4-204ENST00000408993 1763 ntAPPRIS P1 TSL 5 BASIC21.95■■□□□ 1.11
COL18A1P39060 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
COL18A1P39060 SFRP2-201ENST00000274063 2032 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
Retrieved 100 of 98,524 protein–RNA pairs in 41.7 ms