Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
HMGA1P17096 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
HMGA1P17096 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
HMGA1P17096 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
HMGA1P17096 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC17.45■□□□□ 0.38
HMGA1P17096 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
HMGA1P17096 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC17.45■□□□□ 0.38
HMGA1P17096 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC17.45■□□□□ 0.38
HMGA1P17096 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC17.45■□□□□ 0.38
HMGA1P17096 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC17.45■□□□□ 0.38
HMGA1P17096 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC17.45■□□□□ 0.38
HMGA1P17096 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC17.45■□□□□ 0.38
HMGA1P17096 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC17.45■□□□□ 0.38
HMGA1P17096 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
HMGA1P17096 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC17.45■□□□□ 0.38
HMGA1P17096 LRRC37A5P-201ENST00000374304 1103 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
HMGA1P17096 HSD17B10-203ENST00000375304 916 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
HMGA1P17096 CACNB2-206ENST00000377328 1233 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
HMGA1P17096 AMACR-202ENST00000382068 862 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
HMGA1P17096 FOLR3-201ENST00000442948 805 ntTSL 5 BASIC17.45■□□□□ 0.38
HMGA1P17096 MAGI2-AS3-208ENST00000446159 670 ntTSL 3 BASIC17.45■□□□□ 0.38
HMGA1P17096 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC17.45■□□□□ 0.38
HMGA1P17096 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
HMGA1P17096 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC17.45■□□□□ 0.38
HMGA1P17096 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
HMGA1P17096 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
HMGA1P17096 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
HMGA1P17096 AP005329.2-201ENST00000580139 1771 ntTSL 2 BASIC17.45■□□□□ 0.38
HMGA1P17096 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC17.45■□□□□ 0.38
HMGA1P17096 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC17.45■□□□□ 0.38
HMGA1P17096 REEP2-211ENST00000613650 1944 ntTSL 5 BASIC17.45■□□□□ 0.38
HMGA1P17096 TUBB3P1-201ENST00000405796 1332 ntBASIC17.45■□□□□ 0.38
HMGA1P17096 NOX4-215ENST00000534731 2156 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
HMGA1P17096 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC17.45■□□□□ 0.38
HMGA1P17096 AC008677.1-201ENST00000519230 1561 ntBASIC17.45■□□□□ 0.38
HMGA1P17096 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
HMGA1P17096 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC17.44■□□□□ 0.38
HMGA1P17096 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
HMGA1P17096 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
HMGA1P17096 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
HMGA1P17096 EVA1A-205ENST00000410113 1747 ntAPPRIS P2 TSL 3 BASIC17.44■□□□□ 0.38
HMGA1P17096 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC17.44■□□□□ 0.38
HMGA1P17096 BCL2L12-203ENST00000441864 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
HMGA1P17096 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC17.44■□□□□ 0.38
HMGA1P17096 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC17.44■□□□□ 0.38
HMGA1P17096 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC17.44■□□□□ 0.38
HMGA1P17096 VCX-202ENST00000381059 967 ntAPPRIS P2 TSL 1 (best) BASIC17.44■□□□□ 0.38
HMGA1P17096 PTGES3-205ENST00000456859 957 ntTSL 2 BASIC17.44■□□□□ 0.38
HMGA1P17096 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
HMGA1P17096 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
HMGA1P17096 ALG1L8P-201ENST00000533887 760 ntBASIC17.44■□□□□ 0.38
HMGA1P17096 DUT-210ENST00000559935 569 ntTSL 3 BASIC17.44■□□□□ 0.38
HMGA1P17096 RPL13-214ENST00000567815 712 ntAPPRIS P1 TSL 3 BASIC17.44■□□□□ 0.38
HMGA1P17096 AJ003147.2-201ENST00000576468 629 ntTSL 3 BASIC17.44■□□□□ 0.38
HMGA1P17096 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
HMGA1P17096 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC17.44■□□□□ 0.38
HMGA1P17096 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC17.44■□□□□ 0.38
HMGA1P17096 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
HMGA1P17096 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC17.44■□□□□ 0.38
HMGA1P17096 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
HMGA1P17096 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
HMGA1P17096 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
HMGA1P17096 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC17.44■□□□□ 0.38
HMGA1P17096 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC17.44■□□□□ 0.38
HMGA1P17096 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC17.44■□□□□ 0.38
HMGA1P17096 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC17.44■□□□□ 0.38
HMGA1P17096 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC17.44■□□□□ 0.38
HMGA1P17096 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
HMGA1P17096 ASAH1-231ENST00000636577 2129 ntTSL 5 BASIC17.44■□□□□ 0.38
HMGA1P17096 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC17.44■□□□□ 0.38
HMGA1P17096 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
HMGA1P17096 ARL5A-201ENST00000295087 5326 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
HMGA1P17096 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
HMGA1P17096 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
HMGA1P17096 PRMT2-208ENST00000451211 1878 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
HMGA1P17096 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
HMGA1P17096 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC17.44■□□□□ 0.38
HMGA1P17096 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
HMGA1P17096 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC17.43■□□□□ 0.38
HMGA1P17096 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC17.43■□□□□ 0.38
HMGA1P17096 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC17.43■□□□□ 0.38
HMGA1P17096 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
HMGA1P17096 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
HMGA1P17096 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
HMGA1P17096 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC17.43■□□□□ 0.38
HMGA1P17096 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
HMGA1P17096 PILRB-208ENST00000452089 2099 ntAPPRIS P2 TSL 2 BASIC17.43■□□□□ 0.38
HMGA1P17096 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
HMGA1P17096 GATB-209ENST00000512306 1519 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
HMGA1P17096 HPCAL1-208ENST00000622018 1535 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
HMGA1P17096 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
HMGA1P17096 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC17.43■□□□□ 0.38
HMGA1P17096 SIVA1-202ENST00000347067 550 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
HMGA1P17096 CD81-202ENST00000381036 880 ntTSL 3 BASIC17.43■□□□□ 0.38
HMGA1P17096 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC17.43■□□□□ 0.38
HMGA1P17096 AC142381.1-201ENST00000426099 345 ntBASIC17.43■□□□□ 0.38
HMGA1P17096 WDR53-204ENST00000433160 887 ntTSL 5 BASIC17.43■□□□□ 0.38
HMGA1P17096 BCRP1-201ENST00000444246 691 ntBASIC17.43■□□□□ 0.38
HMGA1P17096 ITGA9-AS1-209ENST00000450990 562 ntTSL 4 BASIC17.43■□□□□ 0.38
HMGA1P17096 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 40.1 ms