Protein–RNA interactions for Protein: O00151

PDLIM1, PDZ and LIM domain protein 1, humanhuman

Predictions only

Length 329 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM1O00151 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC16.22■□□□□ 0.19
PDLIM1O00151 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC16.21■□□□□ 0.19
PDLIM1O00151 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC16.21■□□□□ 0.19
PDLIM1O00151 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
PDLIM1O00151 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC16.21■□□□□ 0.19
PDLIM1O00151 LMNA-201ENST00000347559 3137 ntTSL 5 BASIC16.21■□□□□ 0.19
PDLIM1O00151 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
PDLIM1O00151 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC16.21■□□□□ 0.19
PDLIM1O00151 VWA2-203ENST00000603594 2600 ntTSL 2 BASIC16.21■□□□□ 0.19
PDLIM1O00151 ASCL1-201ENST00000266744 2472 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
PDLIM1O00151 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC16.21■□□□□ 0.19
PDLIM1O00151 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC16.21■□□□□ 0.19
PDLIM1O00151 AK4-207ENST00000545314 6887 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
PDLIM1O00151 ADAMTS4-201ENST00000367995 1961 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
PDLIM1O00151 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
PDLIM1O00151 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
PDLIM1O00151 DAP-202ENST00000432074 1048 ntTSL 2 BASIC16.21■□□□□ 0.19
PDLIM1O00151 PVRIG2P-201ENST00000435460 978 ntBASIC16.21■□□□□ 0.19
PDLIM1O00151 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC16.21■□□□□ 0.19
PDLIM1O00151 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC16.21■□□□□ 0.19
PDLIM1O00151 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC16.21■□□□□ 0.19
PDLIM1O00151 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC16.21■□□□□ 0.19
PDLIM1O00151 SLC9A2-201ENST00000233969 5410 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
PDLIM1O00151 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
PDLIM1O00151 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
PDLIM1O00151 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC16.21■□□□□ 0.19
PDLIM1O00151 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC16.21■□□□□ 0.19
PDLIM1O00151 WASHC2C-209ENST00000540872 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
PDLIM1O00151 AIFM3-202ENST00000399167 2387 ntAPPRIS P3 TSL 2 BASIC16.21■□□□□ 0.19
PDLIM1O00151 AIFM3-207ENST00000440238 2368 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
PDLIM1O00151 BACE2-203ENST00000347667 8764 ntTSL 1 (best) BASIC16.21■□□□□ 0.18
PDLIM1O00151 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC16.21■□□□□ 0.18
PDLIM1O00151 AP002360.1-202ENST00000530460 2462 ntAPPRIS ALT2 BASIC16.21■□□□□ 0.18
PDLIM1O00151 STAC3-206ENST00000554578 1580 ntTSL 1 (best) BASIC16.21■□□□□ 0.18
PDLIM1O00151 ADAM15-208ENST00000447332 2146 ntAPPRIS ALT2 TSL 2 BASIC16.21■□□□□ 0.18
PDLIM1O00151 PTPN5-201ENST00000358540 3135 ntTSL 1 (best) BASIC16.21■□□□□ 0.18
PDLIM1O00151 ALDH3A1-205ENST00000444455 1771 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.18
PDLIM1O00151 PDE4C-202ENST00000355502 5979 ntAPPRIS P3 TSL 2 BASIC16.2■□□□□ 0.18
PDLIM1O00151 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
PDLIM1O00151 B3GNT8-201ENST00000321702 1874 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
PDLIM1O00151 RAB31-207ENST00000578921 4055 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
PDLIM1O00151 CDC42BPG-201ENST00000342711 5742 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
PDLIM1O00151 AC097376.2-201ENST00000608661 2510 ntTSL 5 BASIC16.2■□□□□ 0.18
PDLIM1O00151 ONECUT1-201ENST00000305901 2092 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
PDLIM1O00151 CACNA1H-206ENST00000565831 7815 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
PDLIM1O00151 ZNF212-201ENST00000335870 2810 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
PDLIM1O00151 TPD52L2-201ENST00000217121 2362 ntTSL 2 BASIC16.2■□□□□ 0.18
PDLIM1O00151 AL391807.1-203ENST00000604392 2365 ntBASIC16.2■□□□□ 0.18
PDLIM1O00151 KIAA1841-201ENST00000295031 3116 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
PDLIM1O00151 EPS8L2-218ENST00000530636 2469 ntAPPRIS P2 TSL 1 (best) BASIC16.2■□□□□ 0.18
PDLIM1O00151 MAN1C1-203ENST00000374332 4641 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
PDLIM1O00151 MAN1C1-208ENST00000611903 4647 ntTSL 5 BASIC16.2■□□□□ 0.18
PDLIM1O00151 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
PDLIM1O00151 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
PDLIM1O00151 ITFG1-201ENST00000320640 3400 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
PDLIM1O00151 NAF1-201ENST00000274054 1907 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
PDLIM1O00151 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
PDLIM1O00151 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
PDLIM1O00151 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
PDLIM1O00151 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
PDLIM1O00151 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
PDLIM1O00151 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC16.2■□□□□ 0.18
PDLIM1O00151 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC16.2■□□□□ 0.18
PDLIM1O00151 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC16.2■□□□□ 0.18
PDLIM1O00151 AL136038.3-201ENST00000561909 1096 ntBASIC16.2■□□□□ 0.18
PDLIM1O00151 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC16.2■□□□□ 0.18
PDLIM1O00151 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC16.2■□□□□ 0.18
PDLIM1O00151 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
PDLIM1O00151 FRMD5-202ENST00000417257 5011 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
PDLIM1O00151 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
PDLIM1O00151 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
PDLIM1O00151 CDIP1-209ENST00000567695 2062 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
PDLIM1O00151 RUSC1-201ENST00000292254 2163 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
PDLIM1O00151 C16orf54-201ENST00000329410 2585 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
PDLIM1O00151 ATP6V0E2-212ENST00000611515 2565 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
PDLIM1O00151 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC16.19■□□□□ 0.18
PDLIM1O00151 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC16.19■□□□□ 0.18
PDLIM1O00151 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC16.19■□□□□ 0.18
PDLIM1O00151 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
PDLIM1O00151 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC16.19■□□□□ 0.18
PDLIM1O00151 DDX19B-204ENST00000451014 1608 ntTSL 2 BASIC16.19■□□□□ 0.18
PDLIM1O00151 POP4-201ENST00000221770 2321 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
PDLIM1O00151 FES-204ENST00000414248 2327 ntTSL 2 BASIC16.19■□□□□ 0.18
PDLIM1O00151 UROC1-202ENST00000383579 2735 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
PDLIM1O00151 GSPT2-201ENST00000340438 2802 ntAPPRIS P1 BASIC16.19■□□□□ 0.18
PDLIM1O00151 MGAT4B-202ENST00000337755 3027 ntTSL 2 BASIC16.19■□□□□ 0.18
PDLIM1O00151 BTNL9-201ENST00000327705 3500 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
PDLIM1O00151 ANKRD24-206ENST00000600132 4026 ntAPPRIS P2 TSL 5 BASIC16.19■□□□□ 0.18
PDLIM1O00151 ANTXR1-201ENST00000303714 5859 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
PDLIM1O00151 AL365203.3-201ENST00000609742 2057 ntBASIC16.19■□□□□ 0.18
PDLIM1O00151 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC16.19■□□□□ 0.18
PDLIM1O00151 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
PDLIM1O00151 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
PDLIM1O00151 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
PDLIM1O00151 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
PDLIM1O00151 BET1L-202ENST00000332865 533 ntTSL 5 BASIC16.19■□□□□ 0.18
PDLIM1O00151 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
PDLIM1O00151 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC16.19■□□□□ 0.18
PDLIM1O00151 KRT18P65-201ENST00000439811 1286 ntBASIC16.19■□□□□ 0.18
PDLIM1O00151 RNF146-204ENST00000476956 884 ntTSL 2 BASIC16.19■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 48 ms