Protein–RNA interactions for Protein: Q7RTT3

SSX9, Protein SSX9, humanhuman

Predictions only

Length 188 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX9Q7RTT3 LINC01896-206ENST00000575722 1256 ntTSL 2 BASIC19.65■□□□□ 0.74
SSX9Q7RTT3 AC092902.2-221ENST00000628476 965 ntTSL 5 BASIC19.65■□□□□ 0.74
SSX9Q7RTT3 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC19.65■□□□□ 0.74
SSX9Q7RTT3 KCNG2-201ENST00000316249 1401 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SSX9Q7RTT3 TYMP-201ENST00000252029 1630 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
SSX9Q7RTT3 TYMP-203ENST00000395680 1608 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
SSX9Q7RTT3 TYMP-204ENST00000395681 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
SSX9Q7RTT3 BMP2K-204ENST00000502871 3195 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
SSX9Q7RTT3 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
SSX9Q7RTT3 NAGS-201ENST00000293404 2182 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
SSX9Q7RTT3 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
SSX9Q7RTT3 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC19.64■□□□□ 0.73
SSX9Q7RTT3 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
SSX9Q7RTT3 WDR86-204ENST00000477459 1428 ntTSL 2 BASIC19.64■□□□□ 0.73
SSX9Q7RTT3 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
SSX9Q7RTT3 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
SSX9Q7RTT3 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
SSX9Q7RTT3 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
SSX9Q7RTT3 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC19.63■□□□□ 0.73
SSX9Q7RTT3 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
SSX9Q7RTT3 ARHGEF35-201ENST00000378115 2431 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
SSX9Q7RTT3 ANKRD54-201ENST00000215941 2184 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
SSX9Q7RTT3 EPB41L4A-AS2-201ENST00000623705 1396 ntBASIC19.63■□□□□ 0.73
SSX9Q7RTT3 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC19.63■□□□□ 0.73
SSX9Q7RTT3 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC19.63■□□□□ 0.73
SSX9Q7RTT3 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
SSX9Q7RTT3 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
SSX9Q7RTT3 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC19.62■□□□□ 0.73
SSX9Q7RTT3 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC19.62■□□□□ 0.73
SSX9Q7RTT3 YBX2-201ENST00000007699 1590 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SSX9Q7RTT3 SP8-202ENST00000418710 1618 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
SSX9Q7RTT3 ATP6V0A2-209ENST00000613625 1620 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
SSX9Q7RTT3 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC19.61■□□□□ 0.73
SSX9Q7RTT3 RNF19B-203ENST00000373456 2560 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
SSX9Q7RTT3 MBD3-202ENST00000434436 2439 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
SSX9Q7RTT3 AGPS-202ENST00000409888 815 ntTSL 4 BASIC19.61■□□□□ 0.73
SSX9Q7RTT3 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
SSX9Q7RTT3 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
SSX9Q7RTT3 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC19.61■□□□□ 0.73
SSX9Q7RTT3 GAL3ST3-203ENST00000527878 1599 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
SSX9Q7RTT3 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC19.61■□□□□ 0.73
SSX9Q7RTT3 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
SSX9Q7RTT3 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
SSX9Q7RTT3 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
SSX9Q7RTT3 AKT1S1-201ENST00000344175 1760 ntAPPRIS P1 TSL 3 BASIC19.6■□□□□ 0.73
SSX9Q7RTT3 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC19.6■□□□□ 0.73
SSX9Q7RTT3 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
SSX9Q7RTT3 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC19.6■□□□□ 0.73
SSX9Q7RTT3 HOXA4-204ENST00000610970 1728 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SSX9Q7RTT3 FGF20-201ENST00000180166 1688 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SSX9Q7RTT3 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC19.59■□□□□ 0.73
SSX9Q7RTT3 AL359504.2-201ENST00000605506 1601 ntBASIC19.59■□□□□ 0.73
SSX9Q7RTT3 KIF13A-207ENST00000502704 1330 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
SSX9Q7RTT3 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SSX9Q7RTT3 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SSX9Q7RTT3 CR559946.2-201ENST00000623684 991 ntBASIC19.59■□□□□ 0.73
SSX9Q7RTT3 ADAM22-209ENST00000439864 2576 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
SSX9Q7RTT3 AC093323.1-202ENST00000635031 2045 ntBASIC19.59■□□□□ 0.73
SSX9Q7RTT3 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SSX9Q7RTT3 PHF23-212ENST00000576955 1944 ntTSL 2 BASIC19.59■□□□□ 0.73
SSX9Q7RTT3 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
SSX9Q7RTT3 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC19.58■□□□□ 0.73
SSX9Q7RTT3 ABHD17AP4-201ENST00000411545 909 ntBASIC19.58■□□□□ 0.72
SSX9Q7RTT3 PLEKHF2-202ENST00000519516 1144 ntAPPRIS P1 TSL 3 BASIC19.58■□□□□ 0.72
SSX9Q7RTT3 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
SSX9Q7RTT3 CCDC106-202ENST00000586790 2162 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
SSX9Q7RTT3 NECAB2-201ENST00000305202 1608 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
SSX9Q7RTT3 LINC00543-201ENST00000567234 1845 ntBASIC19.58■□□□□ 0.72
SSX9Q7RTT3 IRF2BP1-201ENST00000302165 2564 ntAPPRIS P1 BASIC19.57■□□□□ 0.72
SSX9Q7RTT3 KREMEN2-204ENST00000572045 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
SSX9Q7RTT3 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC19.57■□□□□ 0.72
SSX9Q7RTT3 RCCD1-203ENST00000555155 1871 ntAPPRIS ALT1 TSL 5 BASIC19.57■□□□□ 0.72
SSX9Q7RTT3 PDF-201ENST00000288022 1158 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
SSX9Q7RTT3 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC19.57■□□□□ 0.72
SSX9Q7RTT3 LAT-201ENST00000354453 1713 ntAPPRIS ALT2 TSL 5 BASIC19.56■□□□□ 0.72
SSX9Q7RTT3 LHX3-201ENST00000371746 2403 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
SSX9Q7RTT3 CLTA-207ENST00000470744 1102 ntTSL 2 BASIC19.56■□□□□ 0.72
SSX9Q7RTT3 PHYH-201ENST00000263038 1577 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
SSX9Q7RTT3 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
SSX9Q7RTT3 PMS1-205ENST00000409985 1882 ntTSL 2 BASIC19.56■□□□□ 0.72
SSX9Q7RTT3 AKT1S1-203ENST00000391831 2025 ntAPPRIS P1 TSL 2 BASIC19.56■□□□□ 0.72
SSX9Q7RTT3 ZNF747-203ENST00000568028 1511 ntAPPRIS P1 TSL 2 BASIC19.56■□□□□ 0.72
SSX9Q7RTT3 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
SSX9Q7RTT3 GBX2-201ENST00000306318 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
SSX9Q7RTT3 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
SSX9Q7RTT3 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC19.55■□□□□ 0.72
SSX9Q7RTT3 BMP6-201ENST00000283147 2780 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
SSX9Q7RTT3 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
SSX9Q7RTT3 KCNG1-201ENST00000371571 2211 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
SSX9Q7RTT3 RINL-202ENST00000591812 1910 ntAPPRIS ALT2 TSL 2 BASIC19.55■□□□□ 0.72
SSX9Q7RTT3 ANKRD16-202ENST00000380092 1646 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
SSX9Q7RTT3 GTPBP3-203ENST00000361619 1894 ntTSL 2 BASIC19.54■□□□□ 0.72
SSX9Q7RTT3 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
SSX9Q7RTT3 C16orf74-204ENST00000602719 1002 ntAPPRIS ALT2 TSL 3 BASIC19.54■□□□□ 0.72
SSX9Q7RTT3 MED25-210ENST00000612854 801 ntTSL 5 BASIC19.54■□□□□ 0.72
SSX9Q7RTT3 MED25-213ENST00000620467 1293 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
SSX9Q7RTT3 MED25-214ENST00000622402 642 ntTSL 5 BASIC19.54■□□□□ 0.72
SSX9Q7RTT3 AC073111.5-206ENST00000642087 859 ntAPPRIS P1 BASIC19.54■□□□□ 0.72
SSX9Q7RTT3 EPM2A-208ENST00000618445 1694 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
SSX9Q7RTT3 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 184 ms