Protein–RNA interactions for Protein: H3BT56

CHKB-CPT1B, CHKB-CPT1B readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 60 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHKB-CPT1BH3BT56 ASXL1-212ENST00000620121 5374 ntAPPRIS ALT2 TSL 5 BASIC13.6□□□□□ -0.23
CHKB-CPT1BH3BT56 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
CHKB-CPT1BH3BT56 WNK1-206ENST00000535572 9886 ntAPPRIS ALT2 TSL 1 (best) BASIC13.6□□□□□ -0.23
CHKB-CPT1BH3BT56 PGM5-201ENST00000396392 1782 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
CHKB-CPT1BH3BT56 SLC8A3-202ENST00000356921 5250 ntAPPRIS P3 TSL 1 (best) BASIC13.6□□□□□ -0.23
CHKB-CPT1BH3BT56 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC13.6□□□□□ -0.23
CHKB-CPT1BH3BT56 AC020928.2-201ENST00000588717 2197 ntBASIC13.59□□□□□ -0.23
CHKB-CPT1BH3BT56 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC13.59□□□□□ -0.23
CHKB-CPT1BH3BT56 KLHL31-201ENST00000370905 5743 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
CHKB-CPT1BH3BT56 EIF4G3-205ENST00000400422 5762 ntAPPRIS ALT2 TSL 1 (best) BASIC13.59□□□□□ -0.23
CHKB-CPT1BH3BT56 POU2F2-208ENST00000529952 1716 ntAPPRIS ALT2 TSL 1 (best) BASIC13.59□□□□□ -0.23
CHKB-CPT1BH3BT56 RINL-202ENST00000591812 1910 ntAPPRIS ALT2 TSL 2 BASIC13.58□□□□□ -0.23
CHKB-CPT1BH3BT56 PTH1R-201ENST00000313049 2123 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.23
CHKB-CPT1BH3BT56 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
CHKB-CPT1BH3BT56 SLC16A3-214ENST00000582743 2002 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
CHKB-CPT1BH3BT56 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC13.58□□□□□ -0.24
CHKB-CPT1BH3BT56 ZBTB10-203ENST00000430430 10132 ntAPPRIS P3 TSL 5 BASIC13.58□□□□□ -0.24
CHKB-CPT1BH3BT56 TBC1D10A-201ENST00000215790 2077 ntAPPRIS P3 TSL 1 (best) BASIC13.58□□□□□ -0.24
CHKB-CPT1BH3BT56 FEZ2-203ENST00000379245 2097 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
CHKB-CPT1BH3BT56 UNC13A-205ENST00000551649 6052 ntAPPRIS ALT2 TSL 5 BASIC13.57□□□□□ -0.24
CHKB-CPT1BH3BT56 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
CHKB-CPT1BH3BT56 TAF5L-202ENST00000366674 492 ntTSL 3 BASIC13.57□□□□□ -0.24
CHKB-CPT1BH3BT56 USP13-201ENST00000263966 8323 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
CHKB-CPT1BH3BT56 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC13.57□□□□□ -0.24
CHKB-CPT1BH3BT56 KLC1-203ENST00000347839 2271 ntTSL 5 BASIC13.57□□□□□ -0.24
CHKB-CPT1BH3BT56 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
CHKB-CPT1BH3BT56 TNFSF12-201ENST00000293825 1553 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
CHKB-CPT1BH3BT56 CPOX-201ENST00000264193 2825 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
CHKB-CPT1BH3BT56 MAD2L2-201ENST00000235310 1860 ntAPPRIS P1 TSL 2 BASIC13.57□□□□□ -0.24
CHKB-CPT1BH3BT56 EIF5-201ENST00000216554 5945 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
CHKB-CPT1BH3BT56 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
CHKB-CPT1BH3BT56 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
CHKB-CPT1BH3BT56 TMEM202-AS1-202ENST00000565181 2325 ntBASIC13.56□□□□□ -0.24
CHKB-CPT1BH3BT56 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
CHKB-CPT1BH3BT56 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
CHKB-CPT1BH3BT56 TTBK2-207ENST00000567840 1961 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
CHKB-CPT1BH3BT56 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
CHKB-CPT1BH3BT56 FLYWCH1-201ENST00000253928 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC13.55□□□□□ -0.24
CHKB-CPT1BH3BT56 HDGFL1-201ENST00000510882 2174 ntAPPRIS P1 BASIC13.55□□□□□ -0.24
CHKB-CPT1BH3BT56 DACT3-201ENST00000300875 2526 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
CHKB-CPT1BH3BT56 ARRDC1-201ENST00000371421 1586 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
CHKB-CPT1BH3BT56 ANKIB1-201ENST00000265742 6081 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
CHKB-CPT1BH3BT56 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
CHKB-CPT1BH3BT56 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC13.55□□□□□ -0.24
CHKB-CPT1BH3BT56 CACNA1A-240ENST00000637432 7809 ntAPPRIS ALT2 TSL 5 BASIC13.54□□□□□ -0.24
CHKB-CPT1BH3BT56 RAB26-201ENST00000210187 1675 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
CHKB-CPT1BH3BT56 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC13.54□□□□□ -0.24
CHKB-CPT1BH3BT56 CAMK2N1-201ENST00000375078 2336 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
CHKB-CPT1BH3BT56 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
CHKB-CPT1BH3BT56 GTPBP3-203ENST00000361619 1894 ntTSL 2 BASIC13.54□□□□□ -0.24
CHKB-CPT1BH3BT56 PCYT2-205ENST00000570391 1857 ntTSL 2 BASIC13.54□□□□□ -0.24
CHKB-CPT1BH3BT56 NAGLU-201ENST00000225927 2544 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
CHKB-CPT1BH3BT56 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
CHKB-CPT1BH3BT56 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
CHKB-CPT1BH3BT56 PSMG1-201ENST00000331573 2154 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
CHKB-CPT1BH3BT56 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC13.53□□□□□ -0.24
CHKB-CPT1BH3BT56 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
CHKB-CPT1BH3BT56 TACC1-202ENST00000317827 7802 ntAPPRIS P3 TSL 1 (best) BASIC13.53□□□□□ -0.24
CHKB-CPT1BH3BT56 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC13.53□□□□□ -0.24
CHKB-CPT1BH3BT56 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC13.53□□□□□ -0.24
CHKB-CPT1BH3BT56 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC13.53□□□□□ -0.24
CHKB-CPT1BH3BT56 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
CHKB-CPT1BH3BT56 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
CHKB-CPT1BH3BT56 SHF-208ENST00000560734 1731 ntTSL 3 BASIC13.53□□□□□ -0.24
CHKB-CPT1BH3BT56 BEND4-201ENST00000502486 8765 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
CHKB-CPT1BH3BT56 CXADR-201ENST00000284878 6254 ntAPPRIS P3 TSL 1 (best) BASIC13.52□□□□□ -0.24
CHKB-CPT1BH3BT56 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC13.52□□□□□ -0.24
CHKB-CPT1BH3BT56 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
CHKB-CPT1BH3BT56 CNIH2-203ENST00000528852 1524 ntAPPRIS ALT1 TSL 1 (best) BASIC13.52□□□□□ -0.25
CHKB-CPT1BH3BT56 AP2M1-202ENST00000382456 2091 ntAPPRIS ALT1 TSL 1 (best) BASIC13.52□□□□□ -0.25
CHKB-CPT1BH3BT56 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
CHKB-CPT1BH3BT56 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
CHKB-CPT1BH3BT56 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC13.52□□□□□ -0.25
CHKB-CPT1BH3BT56 ITGA8-201ENST00000378076 6755 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
CHKB-CPT1BH3BT56 SHISA6-203ENST00000432116 7518 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
CHKB-CPT1BH3BT56 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
CHKB-CPT1BH3BT56 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC13.51□□□□□ -0.25
CHKB-CPT1BH3BT56 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
CHKB-CPT1BH3BT56 DYRK2-203ENST00000393555 2209 ntAPPRIS ALT1 TSL 1 (best) BASIC13.51□□□□□ -0.25
CHKB-CPT1BH3BT56 PPP1R14C-201ENST00000361131 2152 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
CHKB-CPT1BH3BT56 DHRS13-201ENST00000378895 1921 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
CHKB-CPT1BH3BT56 DRD4-201ENST00000176183 1375 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
CHKB-CPT1BH3BT56 PCSK5-201ENST00000376752 5756 ntAPPRIS P3 TSL 1 (best) BASIC13.51□□□□□ -0.25
CHKB-CPT1BH3BT56 AL024507.2-201ENST00000606070 2574 ntBASIC13.51□□□□□ -0.25
CHKB-CPT1BH3BT56 CACNA1A-202ENST00000573710 7569 ntAPPRIS ALT2 TSL 5 BASIC13.51□□□□□ -0.25
CHKB-CPT1BH3BT56 PMS1-205ENST00000409985 1882 ntTSL 2 BASIC13.5□□□□□ -0.25
CHKB-CPT1BH3BT56 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC13.5□□□□□ -0.25
CHKB-CPT1BH3BT56 WRNIP1-205ENST00000618555 2651 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
CHKB-CPT1BH3BT56 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
CHKB-CPT1BH3BT56 MDGA1-203ENST00000434837 10736 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
CHKB-CPT1BH3BT56 BAG5-201ENST00000299204 4848 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
CHKB-CPT1BH3BT56 N4BP3-201ENST00000274605 6080 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
CHKB-CPT1BH3BT56 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
CHKB-CPT1BH3BT56 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
CHKB-CPT1BH3BT56 HNRNPAB-202ENST00000358344 1796 ntAPPRIS P4 TSL 1 (best) BASIC13.5□□□□□ -0.25
CHKB-CPT1BH3BT56 ANKRD17-201ENST00000330838 7734 ntAPPRIS ALT2 TSL 2 BASIC13.49□□□□□ -0.25
CHKB-CPT1BH3BT56 CLK2-201ENST00000355560 2120 ntAPPRIS ALT1 TSL 5 BASIC13.49□□□□□ -0.25
CHKB-CPT1BH3BT56 LRRC61-202ENST00000359623 1877 ntAPPRIS P1 TSL 2 BASIC13.49□□□□□ -0.25
CHKB-CPT1BH3BT56 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
CHKB-CPT1BH3BT56 MAPT-205ENST00000351559 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC13.49□□□□□ -0.25
Retrieved 100 of 98,524 protein–RNA pairs in 66.9 ms