Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC18.18■□□□□ 0.5
SIX2Q9NPC8 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
SIX2Q9NPC8 AC092364.2-201ENST00000596710 2692 ntBASIC18.17■□□□□ 0.5
SIX2Q9NPC8 PPEF2-207ENST00000621010 1797 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
SIX2Q9NPC8 DOC2GP-204ENST00000639052 2548 ntBASIC18.17■□□□□ 0.5
SIX2Q9NPC8 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
SIX2Q9NPC8 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
SIX2Q9NPC8 ANTXRL-205ENST00000620264 2206 ntAPPRIS P2 TSL 5 BASIC18.17■□□□□ 0.5
SIX2Q9NPC8 GLUD1-201ENST00000277865 3039 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
SIX2Q9NPC8 SEPT11-201ENST00000264893 5593 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
SIX2Q9NPC8 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC18.17■□□□□ 0.5
SIX2Q9NPC8 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC18.17■□□□□ 0.5
SIX2Q9NPC8 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC18.17■□□□□ 0.5
SIX2Q9NPC8 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC18.17■□□□□ 0.5
SIX2Q9NPC8 FAM197Y8-203ENST00000450145 560 ntBASIC18.17■□□□□ 0.5
SIX2Q9NPC8 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC18.17■□□□□ 0.5
SIX2Q9NPC8 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC18.17■□□□□ 0.5
SIX2Q9NPC8 ETFA-208ENST00000559602 792 ntTSL 3 BASIC18.17■□□□□ 0.5
SIX2Q9NPC8 AC008735.5-201ENST00000623544 497 ntBASIC18.17■□□□□ 0.5
SIX2Q9NPC8 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
SIX2Q9NPC8 AIFM1-201ENST00000287295 2260 ntAPPRIS P4 TSL 1 (best) BASIC18.17■□□□□ 0.5
SIX2Q9NPC8 PKLR-202ENST00000392414 2479 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
SIX2Q9NPC8 FGFR2-215ENST00000457416 3061 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
SIX2Q9NPC8 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC18.17■□□□□ 0.5
SIX2Q9NPC8 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
SIX2Q9NPC8 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
SIX2Q9NPC8 AL512652.2-201ENST00000625156 1716 ntBASIC18.17■□□□□ 0.5
SIX2Q9NPC8 AC090340.1-201ENST00000620778 4980 ntBASIC18.17■□□□□ 0.5
SIX2Q9NPC8 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
SIX2Q9NPC8 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
SIX2Q9NPC8 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC18.17■□□□□ 0.5
SIX2Q9NPC8 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
SIX2Q9NPC8 CYP2R1-201ENST00000334636 2235 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
SIX2Q9NPC8 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC18.16■□□□□ 0.5
SIX2Q9NPC8 AC005052.1-201ENST00000625181 2492 ntBASIC18.16■□□□□ 0.5
SIX2Q9NPC8 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC18.16■□□□□ 0.5
SIX2Q9NPC8 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
SIX2Q9NPC8 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
SIX2Q9NPC8 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC18.16■□□□□ 0.5
SIX2Q9NPC8 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC18.16■□□□□ 0.5
SIX2Q9NPC8 IGHM-202ENST00000637539 1683 ntAPPRIS P5 BASIC18.16■□□□□ 0.5
SIX2Q9NPC8 CLMP-201ENST00000448775 5072 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
SIX2Q9NPC8 AP002414.3-201ENST00000589352 1468 ntBASIC18.16■□□□□ 0.5
SIX2Q9NPC8 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC18.16■□□□□ 0.5
SIX2Q9NPC8 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC18.16■□□□□ 0.5
SIX2Q9NPC8 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
SIX2Q9NPC8 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
SIX2Q9NPC8 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC18.16■□□□□ 0.5
SIX2Q9NPC8 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC18.16■□□□□ 0.5
SIX2Q9NPC8 BAALC-AS2-201ENST00000436771 496 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
SIX2Q9NPC8 AC073648.2-201ENST00000510116 352 ntBASIC18.16■□□□□ 0.5
SIX2Q9NPC8 AC136632.2-201ENST00000512891 861 ntBASIC18.16■□□□□ 0.5
SIX2Q9NPC8 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC18.16■□□□□ 0.5
SIX2Q9NPC8 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
SIX2Q9NPC8 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC18.16■□□□□ 0.5
SIX2Q9NPC8 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
SIX2Q9NPC8 PDAP1-201ENST00000350498 2546 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
SIX2Q9NPC8 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC18.16■□□□□ 0.5
SIX2Q9NPC8 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
SIX2Q9NPC8 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC18.16■□□□□ 0.5
SIX2Q9NPC8 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC18.16■□□□□ 0.5
SIX2Q9NPC8 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
SIX2Q9NPC8 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
SIX2Q9NPC8 PI16-201ENST00000373674 2190 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
SIX2Q9NPC8 SLC19A2-202ENST00000367804 2976 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
SIX2Q9NPC8 UCKL1-203ENST00000369908 1954 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
SIX2Q9NPC8 TIGAR-201ENST00000179259 2782 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
SIX2Q9NPC8 PLK2-215ENST00000617412 2792 ntTSL 5 BASIC18.15■□□□□ 0.5
SIX2Q9NPC8 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
SIX2Q9NPC8 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
SIX2Q9NPC8 CTSB-228ENST00000533455 2009 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
SIX2Q9NPC8 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC18.15■□□□□ 0.5
SIX2Q9NPC8 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
SIX2Q9NPC8 TVP23B-201ENST00000307767 2064 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
SIX2Q9NPC8 FBXO21-201ENST00000330622 2906 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
SIX2Q9NPC8 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
SIX2Q9NPC8 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC18.15■□□□□ 0.5
SIX2Q9NPC8 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
SIX2Q9NPC8 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
SIX2Q9NPC8 CENPM-204ENST00000402420 688 ntTSL 5 BASIC18.15■□□□□ 0.5
SIX2Q9NPC8 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC18.15■□□□□ 0.5
SIX2Q9NPC8 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC18.15■□□□□ 0.5
SIX2Q9NPC8 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC18.15■□□□□ 0.5
SIX2Q9NPC8 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
SIX2Q9NPC8 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC18.15■□□□□ 0.5
SIX2Q9NPC8 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC18.15■□□□□ 0.5
SIX2Q9NPC8 AC008667.4-201ENST00000607370 168 ntBASIC18.15■□□□□ 0.5
SIX2Q9NPC8 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC18.15■□□□□ 0.5
SIX2Q9NPC8 AC079328.2-201ENST00000561241 3354 ntBASIC18.15■□□□□ 0.5
SIX2Q9NPC8 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
SIX2Q9NPC8 ME2P1-201ENST00000426028 1970 ntBASIC18.15■□□□□ 0.5
SIX2Q9NPC8 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
SIX2Q9NPC8 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC18.15■□□□□ 0.5
SIX2Q9NPC8 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
SIX2Q9NPC8 VEPH1-218ENST00000494677 1714 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
SIX2Q9NPC8 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC18.15■□□□□ 0.5
SIX2Q9NPC8 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
SIX2Q9NPC8 COQ8A-202ENST00000366778 2743 ntTSL 1 (best) BASIC18.14■□□□□ 0.5
SIX2Q9NPC8 PCGF1-201ENST00000233630 1792 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
SIX2Q9NPC8 ZAP70-201ENST00000264972 2437 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 38.9 ms