Protein–RNA interactions for Protein: Q9C037

TRIM4, E3 ubiquitin-protein ligase TRIM4, humanhuman

Predictions only

Length 500 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM4Q9C037 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC17.07■□□□□ 0.32
TRIM4Q9C037 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
TRIM4Q9C037 SHTN1-201ENST00000260777 5308 ntAPPRIS ALT2 TSL 2 BASIC17.07■□□□□ 0.32
TRIM4Q9C037 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
TRIM4Q9C037 SCN3B-202ENST00000392770 6061 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
TRIM4Q9C037 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
TRIM4Q9C037 PLEKHA8-205ENST00000449726 7835 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
TRIM4Q9C037 ZFPM2-201ENST00000407775 4700 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
TRIM4Q9C037 CROCC-201ENST00000375541 6656 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
TRIM4Q9C037 BCL11A-201ENST00000335712 5942 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
TRIM4Q9C037 IRX6-201ENST00000290552 3128 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
TRIM4Q9C037 C1R-202ENST00000536053 2347 ntTSL 2 BASIC17.07■□□□□ 0.32
TRIM4Q9C037 SYT5-207ENST00000590851 3619 ntTSL 2 BASIC17.07■□□□□ 0.32
TRIM4Q9C037 PCDHA3-201ENST00000522353 5260 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
TRIM4Q9C037 APAF1-201ENST00000333991 4539 ntTSL 5 BASIC17.06■□□□□ 0.32
TRIM4Q9C037 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
TRIM4Q9C037 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC17.06■□□□□ 0.32
TRIM4Q9C037 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
TRIM4Q9C037 TPCN1-201ENST00000335509 5274 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
TRIM4Q9C037 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
TRIM4Q9C037 DNM2-203ENST00000389253 3581 ntTSL 5 BASIC17.06■□□□□ 0.32
TRIM4Q9C037 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
TRIM4Q9C037 AKR1A1-214ENST00000621846 1360 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
TRIM4Q9C037 TLE2-202ENST00000426948 2406 ntTSL 5 BASIC17.06■□□□□ 0.32
TRIM4Q9C037 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
TRIM4Q9C037 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
TRIM4Q9C037 FYCO1-205ENST00000535325 8578 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
TRIM4Q9C037 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
TRIM4Q9C037 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
TRIM4Q9C037 COX10-202ENST00000429152 875 ntTSL 2 BASIC17.06■□□□□ 0.32
TRIM4Q9C037 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC17.06■□□□□ 0.32
TRIM4Q9C037 AF238378.1-201ENST00000526806 358 ntBASIC17.06■□□□□ 0.32
TRIM4Q9C037 RPL8-207ENST00000528957 1015 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
TRIM4Q9C037 AC009065.1-201ENST00000564055 1225 ntBASIC17.06■□□□□ 0.32
TRIM4Q9C037 NUBP2-214ENST00000568706 913 ntTSL 2 BASIC17.06■□□□□ 0.32
TRIM4Q9C037 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
TRIM4Q9C037 MNT-208ENST00000575394 606 ntTSL 4 BASIC17.06■□□□□ 0.32
TRIM4Q9C037 MIR3917-201ENST00000580971 93 ntBASIC17.06■□□□□ 0.32
TRIM4Q9C037 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC17.06■□□□□ 0.32
TRIM4Q9C037 AL136038.4-201ENST00000603606 1261 ntBASIC17.06■□□□□ 0.32
TRIM4Q9C037 MYH14-210ENST00000601313 6896 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
TRIM4Q9C037 GCK-209ENST00000616242 2260 ntTSL 5 BASIC17.06■□□□□ 0.32
TRIM4Q9C037 DDX1-201ENST00000233084 2739 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
TRIM4Q9C037 MYB-203ENST00000341911 3672 ntAPPRIS ALT1 TSL 1 (best) BASIC17.06■□□□□ 0.32
TRIM4Q9C037 UGT8-201ENST00000310836 4084 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
TRIM4Q9C037 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
TRIM4Q9C037 AMZ2P1-202ENST00000430983 3425 ntTSL 2 BASIC17.06■□□□□ 0.32
TRIM4Q9C037 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
TRIM4Q9C037 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
TRIM4Q9C037 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC17.06■□□□□ 0.32
TRIM4Q9C037 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
TRIM4Q9C037 MYLK2-201ENST00000375985 2787 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
TRIM4Q9C037 CBWD2-204ENST00000433343 1411 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
TRIM4Q9C037 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC17.05■□□□□ 0.32
TRIM4Q9C037 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC17.05■□□□□ 0.32
TRIM4Q9C037 SASH3-201ENST00000356892 2626 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
TRIM4Q9C037 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
TRIM4Q9C037 ABHD18-202ENST00000398965 2177 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
TRIM4Q9C037 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
TRIM4Q9C037 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC17.05■□□□□ 0.32
TRIM4Q9C037 SCLT1-208ENST00000506368 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
TRIM4Q9C037 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
TRIM4Q9C037 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
TRIM4Q9C037 ZNF414-201ENST00000255616 1178 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
TRIM4Q9C037 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
TRIM4Q9C037 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC17.05■□□□□ 0.32
TRIM4Q9C037 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC17.05■□□□□ 0.32
TRIM4Q9C037 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
TRIM4Q9C037 KIRREL3-AS3-201ENST00000404882 831 ntBASIC17.05■□□□□ 0.32
TRIM4Q9C037 RPS8P6-201ENST00000426177 609 ntBASIC17.05■□□□□ 0.32
TRIM4Q9C037 RPS27L-204ENST00000455271 923 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
TRIM4Q9C037 PPIE-208ENST00000470213 927 ntTSL 3 BASIC17.05■□□□□ 0.32
TRIM4Q9C037 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC17.05■□□□□ 0.32
TRIM4Q9C037 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC17.05■□□□□ 0.32
TRIM4Q9C037 AC106730.1-201ENST00000566722 1090 ntBASIC17.05■□□□□ 0.32
TRIM4Q9C037 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
TRIM4Q9C037 AC055717.3-201ENST00000622967 595 ntBASIC17.05■□□□□ 0.32
TRIM4Q9C037 AL157888.1-201ENST00000631930 593 ntBASIC17.05■□□□□ 0.32
TRIM4Q9C037 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
TRIM4Q9C037 SAP130-203ENST00000357702 4173 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
TRIM4Q9C037 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
TRIM4Q9C037 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
TRIM4Q9C037 CTNNBIP1-203ENST00000377263 3000 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
TRIM4Q9C037 PAPLN-202ENST00000340738 5834 ntAPPRIS P2 TSL 5 BASIC17.05■□□□□ 0.32
TRIM4Q9C037 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
TRIM4Q9C037 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
TRIM4Q9C037 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
TRIM4Q9C037 ZNF84-202ENST00000392319 7020 ntAPPRIS P2 TSL 1 (best) BASIC17.05■□□□□ 0.32
TRIM4Q9C037 PSD-201ENST00000020673 4183 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
TRIM4Q9C037 PIGQ-201ENST00000026218 2846 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
TRIM4Q9C037 RDX-201ENST00000343115 4491 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
TRIM4Q9C037 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC17.05■□□□□ 0.32
TRIM4Q9C037 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
TRIM4Q9C037 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
TRIM4Q9C037 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
TRIM4Q9C037 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
TRIM4Q9C037 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC17.04■□□□□ 0.32
TRIM4Q9C037 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC17.04■□□□□ 0.32
TRIM4Q9C037 AC007728.2-201ENST00000563315 2296 ntTSL 5 BASIC17.04■□□□□ 0.32
TRIM4Q9C037 PRDM8-201ENST00000339711 4095 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 62 ms