Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
TRAIPQ9BWF2 AC244153.1-202ENST00000617855 482 ntTSL 3 BASIC18.57■□□□□ 0.56
TRAIPQ9BWF2 PDCD6-214ENST00000628729 1073 ntTSL 5 BASIC18.57■□□□□ 0.56
TRAIPQ9BWF2 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
TRAIPQ9BWF2 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC18.57■□□□□ 0.56
TRAIPQ9BWF2 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
TRAIPQ9BWF2 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC18.57■□□□□ 0.56
TRAIPQ9BWF2 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
TRAIPQ9BWF2 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC18.57■□□□□ 0.56
TRAIPQ9BWF2 WNK1-206ENST00000535572 9886 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
TRAIPQ9BWF2 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
TRAIPQ9BWF2 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
TRAIPQ9BWF2 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
TRAIPQ9BWF2 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
TRAIPQ9BWF2 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
TRAIPQ9BWF2 VPS37A-201ENST00000324849 4906 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
TRAIPQ9BWF2 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
TRAIPQ9BWF2 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
TRAIPQ9BWF2 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC18.56■□□□□ 0.56
TRAIPQ9BWF2 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC18.56■□□□□ 0.56
TRAIPQ9BWF2 STK25-201ENST00000316586 4619 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
TRAIPQ9BWF2 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC18.56■□□□□ 0.56
TRAIPQ9BWF2 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
TRAIPQ9BWF2 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
TRAIPQ9BWF2 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
TRAIPQ9BWF2 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
TRAIPQ9BWF2 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC18.56■□□□□ 0.56
TRAIPQ9BWF2 DARS-AS1-203ENST00000438432 768 ntTSL 3 BASIC18.56■□□□□ 0.56
TRAIPQ9BWF2 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC18.56■□□□□ 0.56
TRAIPQ9BWF2 FXYD1-208ENST00000589209 428 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
TRAIPQ9BWF2 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC18.56■□□□□ 0.56
TRAIPQ9BWF2 RPS15-207ENST00000591032 550 ntTSL 3 BASIC18.56■□□□□ 0.56
TRAIPQ9BWF2 LINC01128-208ENST00000608189 824 ntTSL 5 BASIC18.56■□□□□ 0.56
TRAIPQ9BWF2 FXYD1-211ENST00000612146 690 ntAPPRIS P1 TSL 3 BASIC18.56■□□□□ 0.56
TRAIPQ9BWF2 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
TRAIPQ9BWF2 EVI5L-202ENST00000538904 2418 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
TRAIPQ9BWF2 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC18.56■□□□□ 0.56
TRAIPQ9BWF2 PTPRU-202ENST00000373779 5579 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
TRAIPQ9BWF2 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
TRAIPQ9BWF2 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC18.56■□□□□ 0.56
TRAIPQ9BWF2 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
TRAIPQ9BWF2 MALT1-202ENST00000348428 9368 ntAPPRIS P4 TSL 1 (best) BASIC18.56■□□□□ 0.56
TRAIPQ9BWF2 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC18.56■□□□□ 0.56
TRAIPQ9BWF2 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
TRAIPQ9BWF2 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC18.55■□□□□ 0.56
TRAIPQ9BWF2 C2orf27A-205ENST00000624391 1335 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
TRAIPQ9BWF2 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
TRAIPQ9BWF2 PARD3-201ENST00000340077 3518 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
TRAIPQ9BWF2 UBFD1-201ENST00000395878 5110 ntAPPRIS P2 TSL 2 BASIC18.55■□□□□ 0.56
TRAIPQ9BWF2 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
TRAIPQ9BWF2 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
TRAIPQ9BWF2 KDSR-202ENST00000406396 5447 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
TRAIPQ9BWF2 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC18.55■□□□□ 0.56
TRAIPQ9BWF2 TECR-201ENST00000215567 1171 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
TRAIPQ9BWF2 TMEM219-201ENST00000279396 999 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
TRAIPQ9BWF2 CRLF2-202ENST00000381567 1013 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
TRAIPQ9BWF2 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC18.55■□□□□ 0.56
TRAIPQ9BWF2 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC18.55■□□□□ 0.56
TRAIPQ9BWF2 ADH5P3-201ENST00000433842 1137 ntBASIC18.55■□□□□ 0.56
TRAIPQ9BWF2 AC140658.5-201ENST00000438532 169 ntBASIC18.55■□□□□ 0.56
TRAIPQ9BWF2 NMU-203ENST00000507338 658 ntTSL 3 BASIC18.55■□□□□ 0.56
TRAIPQ9BWF2 AC112191.1-201ENST00000523689 701 ntBASIC18.55■□□□□ 0.56
TRAIPQ9BWF2 MMP17-203ENST00000535004 719 ntTSL 3 BASIC18.55■□□□□ 0.56
TRAIPQ9BWF2 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC18.55■□□□□ 0.56
TRAIPQ9BWF2 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC18.55■□□□□ 0.56
TRAIPQ9BWF2 AC104971.3-201ENST00000589794 335 ntTSL 2 BASIC18.55■□□□□ 0.56
TRAIPQ9BWF2 AL355385.1-201ENST00000606123 409 ntBASIC18.55■□□□□ 0.56
TRAIPQ9BWF2 AC105339.1-204ENST00000636249 355 ntBASIC18.55■□□□□ 0.56
TRAIPQ9BWF2 ELF3-201ENST00000359651 4994 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
TRAIPQ9BWF2 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC18.55■□□□□ 0.56
TRAIPQ9BWF2 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
TRAIPQ9BWF2 IQSEC2-202ENST00000396435 6015 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
TRAIPQ9BWF2 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
TRAIPQ9BWF2 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.56
TRAIPQ9BWF2 LRP4-201ENST00000378623 8076 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
TRAIPQ9BWF2 RAB7A-203ENST00000482525 1589 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
TRAIPQ9BWF2 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC18.54■□□□□ 0.56
TRAIPQ9BWF2 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
TRAIPQ9BWF2 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC18.54■□□□□ 0.56
TRAIPQ9BWF2 AC011270.2-201ENST00000624293 2550 ntBASIC18.54■□□□□ 0.56
TRAIPQ9BWF2 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC18.54■□□□□ 0.56
TRAIPQ9BWF2 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
TRAIPQ9BWF2 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
TRAIPQ9BWF2 PRUNE2-202ENST00000376713 1069 ntTSL 5 BASIC18.54■□□□□ 0.56
TRAIPQ9BWF2 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC18.54■□□□□ 0.56
TRAIPQ9BWF2 METTL21AP1-201ENST00000438852 635 ntBASIC18.54■□□□□ 0.56
TRAIPQ9BWF2 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
TRAIPQ9BWF2 TBX18-206ENST00000606784 1230 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
TRAIPQ9BWF2 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC18.54■□□□□ 0.56
TRAIPQ9BWF2 AL356481.3-201ENST00000630523 575 ntTSL 5 BASIC18.54■□□□□ 0.56
TRAIPQ9BWF2 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
TRAIPQ9BWF2 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
TRAIPQ9BWF2 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
TRAIPQ9BWF2 BAZ1B-201ENST00000339594 6102 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
TRAIPQ9BWF2 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
TRAIPQ9BWF2 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC18.54■□□□□ 0.56
TRAIPQ9BWF2 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC18.54■□□□□ 0.56
TRAIPQ9BWF2 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
TRAIPQ9BWF2 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
TRAIPQ9BWF2 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 31.4 ms