Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
PTCHD1Q96NR3 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC16.01■□□□□ 0.15
PTCHD1Q96NR3 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
PTCHD1Q96NR3 VAV2-202ENST00000371851 5101 ntAPPRIS ALT2 TSL 5 BASIC16.01■□□□□ 0.15
PTCHD1Q96NR3 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC16.01■□□□□ 0.15
PTCHD1Q96NR3 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC16■□□□□ 0.15
PTCHD1Q96NR3 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC16■□□□□ 0.15
PTCHD1Q96NR3 MBOAT1-201ENST00000324607 1794 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
PTCHD1Q96NR3 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC16■□□□□ 0.15
PTCHD1Q96NR3 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC16■□□□□ 0.15
PTCHD1Q96NR3 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
PTCHD1Q96NR3 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC16■□□□□ 0.15
PTCHD1Q96NR3 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
PTCHD1Q96NR3 PMS2P7-201ENST00000506558 1336 ntBASIC16■□□□□ 0.15
PTCHD1Q96NR3 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC16■□□□□ 0.15
PTCHD1Q96NR3 KCNK3-201ENST00000302909 6162 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
PTCHD1Q96NR3 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
PTCHD1Q96NR3 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC16■□□□□ 0.15
PTCHD1Q96NR3 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC16■□□□□ 0.15
PTCHD1Q96NR3 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC16■□□□□ 0.15
PTCHD1Q96NR3 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC16■□□□□ 0.15
PTCHD1Q96NR3 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC16■□□□□ 0.15
PTCHD1Q96NR3 HCG4B-203ENST00000450128 991 ntBASIC16■□□□□ 0.15
PTCHD1Q96NR3 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC16■□□□□ 0.15
PTCHD1Q96NR3 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC16■□□□□ 0.15
PTCHD1Q96NR3 CD63-210ENST00000550776 870 ntTSL 5 BASIC16■□□□□ 0.15
PTCHD1Q96NR3 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC16■□□□□ 0.15
PTCHD1Q96NR3 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC16■□□□□ 0.15
PTCHD1Q96NR3 OR7E47P-204ENST00000575924 449 ntBASIC16■□□□□ 0.15
PTCHD1Q96NR3 CYB561-216ENST00000582297 897 ntTSL 3 BASIC16■□□□□ 0.15
PTCHD1Q96NR3 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC16■□□□□ 0.15
PTCHD1Q96NR3 C5orf24-202ENST00000394976 5065 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
PTCHD1Q96NR3 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
PTCHD1Q96NR3 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC16■□□□□ 0.15
PTCHD1Q96NR3 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC16■□□□□ 0.15
PTCHD1Q96NR3 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC16■□□□□ 0.15
PTCHD1Q96NR3 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
PTCHD1Q96NR3 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC16■□□□□ 0.15
PTCHD1Q96NR3 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
PTCHD1Q96NR3 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC16■□□□□ 0.15
PTCHD1Q96NR3 FAM46A-201ENST00000320172 5609 ntAPPRIS P2 TSL 1 (best) BASIC16■□□□□ 0.15
PTCHD1Q96NR3 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
PTCHD1Q96NR3 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
PTCHD1Q96NR3 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
PTCHD1Q96NR3 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
PTCHD1Q96NR3 RRM2B-201ENST00000251810 4931 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
PTCHD1Q96NR3 MDFIC-201ENST00000257724 4598 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
PTCHD1Q96NR3 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
PTCHD1Q96NR3 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
PTCHD1Q96NR3 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
PTCHD1Q96NR3 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
PTCHD1Q96NR3 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
PTCHD1Q96NR3 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC15.99■□□□□ 0.15
PTCHD1Q96NR3 MSRB1-202ENST00000399753 847 ntTSL 3 BASIC15.99■□□□□ 0.15
PTCHD1Q96NR3 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC15.99■□□□□ 0.15
PTCHD1Q96NR3 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
PTCHD1Q96NR3 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
PTCHD1Q96NR3 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC15.99■□□□□ 0.15
PTCHD1Q96NR3 SLC25A6P2-201ENST00000497974 877 ntBASIC15.99■□□□□ 0.15
PTCHD1Q96NR3 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC15.99■□□□□ 0.15
PTCHD1Q96NR3 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC15.99■□□□□ 0.15
PTCHD1Q96NR3 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
PTCHD1Q96NR3 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
PTCHD1Q96NR3 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
PTCHD1Q96NR3 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
PTCHD1Q96NR3 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
PTCHD1Q96NR3 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC15.99■□□□□ 0.15
PTCHD1Q96NR3 AC009053.2-201ENST00000563701 2365 ntBASIC15.99■□□□□ 0.15
PTCHD1Q96NR3 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
PTCHD1Q96NR3 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
PTCHD1Q96NR3 DAGLB-202ENST00000425398 2044 ntTSL 2 BASIC15.99■□□□□ 0.15
PTCHD1Q96NR3 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
PTCHD1Q96NR3 FRMD8P1-201ENST00000440433 1524 ntBASIC15.99■□□□□ 0.15
PTCHD1Q96NR3 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
PTCHD1Q96NR3 SMCHD1-201ENST00000320876 8821 ntAPPRIS P1 TSL 5 BASIC15.98■□□□□ 0.15
PTCHD1Q96NR3 TTLL10-202ENST00000379289 2259 ntAPPRIS P1 TSL 2 BASIC15.98■□□□□ 0.15
PTCHD1Q96NR3 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC15.98■□□□□ 0.15
PTCHD1Q96NR3 NF2-208ENST00000403435 2568 ntTSL 5 BASIC15.98■□□□□ 0.15
PTCHD1Q96NR3 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC15.98■□□□□ 0.15
PTCHD1Q96NR3 UNC119-204ENST00000470125 2050 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
PTCHD1Q96NR3 MAP6-202ENST00000434603 4329 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
PTCHD1Q96NR3 BICD2-201ENST00000356884 6427 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
PTCHD1Q96NR3 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
PTCHD1Q96NR3 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
PTCHD1Q96NR3 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC15.98■□□□□ 0.15
PTCHD1Q96NR3 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
PTCHD1Q96NR3 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC15.98■□□□□ 0.15
PTCHD1Q96NR3 RECK-201ENST00000377966 4888 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
PTCHD1Q96NR3 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
PTCHD1Q96NR3 FABP5-202ENST00000396359 986 ntTSL 5 BASIC15.98■□□□□ 0.15
PTCHD1Q96NR3 KRT18P2-201ENST00000447938 1258 ntBASIC15.98■□□□□ 0.15
PTCHD1Q96NR3 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC15.98■□□□□ 0.15
PTCHD1Q96NR3 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC15.98■□□□□ 0.15
PTCHD1Q96NR3 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC15.98■□□□□ 0.15
PTCHD1Q96NR3 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC15.98■□□□□ 0.15
PTCHD1Q96NR3 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC15.98■□□□□ 0.15
PTCHD1Q96NR3 STX3-203ENST00000529177 1571 ntTSL 2 BASIC15.98■□□□□ 0.15
PTCHD1Q96NR3 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
PTCHD1Q96NR3 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC15.98■□□□□ 0.15
PTCHD1Q96NR3 QRICH2-205ENST00000636395 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 29 ms