Protein–RNA interactions for Protein: Q86U70

LDB1, LIM domain-binding protein 1, humanhuman

Predicted RBP Predictions only

Length 411 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB1Q86U70 KAZN-201ENST00000361144 3838 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
LDB1Q86U70 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
LDB1Q86U70 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
LDB1Q86U70 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
LDB1Q86U70 DUSP8-202ENST00000397374 4480 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
LDB1Q86U70 NOL4L-211ENST00000621426 6577 ntAPPRIS P2 TSL 5 BASIC16.95■□□□□ 0.3
LDB1Q86U70 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
LDB1Q86U70 SUSD4-202ENST00000343846 3480 ntAPPRIS P1 TSL 2 BASIC16.95■□□□□ 0.3
LDB1Q86U70 KLK3-201ENST00000326003 1463 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
LDB1Q86U70 GCK-202ENST00000345378 2421 ntTSL 2 BASIC16.95■□□□□ 0.3
LDB1Q86U70 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
LDB1Q86U70 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
LDB1Q86U70 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
LDB1Q86U70 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
LDB1Q86U70 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
LDB1Q86U70 FAM197Y8-203ENST00000450145 560 ntBASIC16.95■□□□□ 0.3
LDB1Q86U70 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC16.95■□□□□ 0.3
LDB1Q86U70 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC16.95■□□□□ 0.3
LDB1Q86U70 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC16.95■□□□□ 0.3
LDB1Q86U70 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC16.95■□□□□ 0.3
LDB1Q86U70 TERC-201ENST00000602385 541 ntBASIC16.95■□□□□ 0.3
LDB1Q86U70 AL121912.1-201ENST00000603683 238 ntBASIC16.95■□□□□ 0.3
LDB1Q86U70 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC16.95■□□□□ 0.3
LDB1Q86U70 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
LDB1Q86U70 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
LDB1Q86U70 JADE2-202ENST00000361895 3212 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
LDB1Q86U70 MAGEA4-206ENST00000393921 1727 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
LDB1Q86U70 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC16.95■□□□□ 0.3
LDB1Q86U70 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
LDB1Q86U70 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
LDB1Q86U70 CACNA1A-201ENST00000360228 8627 ntAPPRIS P4 TSL 1 (best) BASIC16.95■□□□□ 0.3
LDB1Q86U70 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC16.95■□□□□ 0.3
LDB1Q86U70 GPAT2-201ENST00000359548 2761 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
LDB1Q86U70 TCP1-203ENST00000420894 1671 ntTSL 5 BASIC16.94■□□□□ 0.3
LDB1Q86U70 CACNA1A-253ENST00000637927 6847 ntAPPRIS ALT2 TSL 5 BASIC16.94■□□□□ 0.3
LDB1Q86U70 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
LDB1Q86U70 FLYWCH1-203ENST00000416288 4963 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
LDB1Q86U70 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
LDB1Q86U70 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC16.94■□□□□ 0.3
LDB1Q86U70 AL603756.1-201ENST00000606511 2163 ntBASIC16.94■□□□□ 0.3
LDB1Q86U70 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC16.94■□□□□ 0.3
LDB1Q86U70 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
LDB1Q86U70 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
LDB1Q86U70 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
LDB1Q86U70 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC16.94■□□□□ 0.3
LDB1Q86U70 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC16.94■□□□□ 0.3
LDB1Q86U70 AL450487.1-201ENST00000426799 995 ntBASIC16.94■□□□□ 0.3
LDB1Q86U70 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC16.94■□□□□ 0.3
LDB1Q86U70 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC16.94■□□□□ 0.3
LDB1Q86U70 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
LDB1Q86U70 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC16.94■□□□□ 0.3
LDB1Q86U70 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC16.94■□□□□ 0.3
LDB1Q86U70 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC16.94■□□□□ 0.3
LDB1Q86U70 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC16.94■□□□□ 0.3
LDB1Q86U70 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC16.94■□□□□ 0.3
LDB1Q86U70 AC107918.4-202ENST00000641623 219 ntBASIC16.94■□□□□ 0.3
LDB1Q86U70 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC16.94■□□□□ 0.3
LDB1Q86U70 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC16.94■□□□□ 0.3
LDB1Q86U70 AL118508.1-201ENST00000613502 2345 ntBASIC16.94■□□□□ 0.3
LDB1Q86U70 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
LDB1Q86U70 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
LDB1Q86U70 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
LDB1Q86U70 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC16.94■□□□□ 0.3
LDB1Q86U70 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC16.94■□□□□ 0.3
LDB1Q86U70 OSGEP-201ENST00000206542 2002 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
LDB1Q86U70 EFNB3-201ENST00000226091 3222 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
LDB1Q86U70 BVES-202ENST00000336775 1663 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
LDB1Q86U70 OS9-205ENST00000413095 1660 ntTSL 2 BASIC16.94■□□□□ 0.3
LDB1Q86U70 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
LDB1Q86U70 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC16.94■□□□□ 0.3
LDB1Q86U70 CROCCP1-201ENST00000426910 5675 ntBASIC16.94■□□□□ 0.3
LDB1Q86U70 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
LDB1Q86U70 FOS-208ENST00000555686 1496 ntTSL 2 BASIC16.93■□□□□ 0.3
LDB1Q86U70 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
LDB1Q86U70 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
LDB1Q86U70 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC16.93■□□□□ 0.3
LDB1Q86U70 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC16.93■□□□□ 0.3
LDB1Q86U70 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
LDB1Q86U70 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
LDB1Q86U70 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC16.93■□□□□ 0.3
LDB1Q86U70 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
LDB1Q86U70 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC16.93■□□□□ 0.3
LDB1Q86U70 ADGRG3-202ENST00000450388 1785 ntAPPRIS ALT2 TSL 2 BASIC16.93■□□□□ 0.3
LDB1Q86U70 GALNT10-203ENST00000425427 4344 ntTSL 2 BASIC16.93■□□□□ 0.3
LDB1Q86U70 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
LDB1Q86U70 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC16.93■□□□□ 0.3
LDB1Q86U70 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC16.93■□□□□ 0.3
LDB1Q86U70 ARTN-206ENST00000472435 402 ntTSL 3 BASIC16.93■□□□□ 0.3
LDB1Q86U70 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
LDB1Q86U70 AC073648.2-201ENST00000510116 352 ntBASIC16.93■□□□□ 0.3
LDB1Q86U70 MOK-208ENST00000519058 917 ntTSL 2 BASIC16.93■□□□□ 0.3
LDB1Q86U70 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC16.93■□□□□ 0.3
LDB1Q86U70 OR7E14P-202ENST00000530490 1290 ntBASIC16.93■□□□□ 0.3
LDB1Q86U70 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC16.93■□□□□ 0.3
LDB1Q86U70 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC16.93■□□□□ 0.3
LDB1Q86U70 AL031008.1-201ENST00000619963 541 ntBASIC16.93■□□□□ 0.3
LDB1Q86U70 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC16.93■□□□□ 0.3
LDB1Q86U70 FBXO24-206ENST00000468962 1901 ntTSL 2 BASIC16.93■□□□□ 0.3
LDB1Q86U70 ITGB4-201ENST00000200181 5919 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
LDB1Q86U70 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC16.93■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 25.9 ms