Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC17.99■□□□□ 0.47
USP41Q3LFD5 KLK3-201ENST00000326003 1463 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
USP41Q3LFD5 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
USP41Q3LFD5 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC17.99■□□□□ 0.47
USP41Q3LFD5 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC17.99■□□□□ 0.47
USP41Q3LFD5 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC17.99■□□□□ 0.47
USP41Q3LFD5 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
USP41Q3LFD5 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
USP41Q3LFD5 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC17.98■□□□□ 0.47
USP41Q3LFD5 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC17.98■□□□□ 0.47
USP41Q3LFD5 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC17.98■□□□□ 0.47
USP41Q3LFD5 ZDHHC20-202ENST00000382466 5338 ntAPPRIS P3 TSL 1 (best) BASIC17.98■□□□□ 0.47
USP41Q3LFD5 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC17.98■□□□□ 0.47
USP41Q3LFD5 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC17.98■□□□□ 0.47
USP41Q3LFD5 ALKBH6-202ENST00000378875 973 ntAPPRIS P3 TSL 1 (best) BASIC17.98■□□□□ 0.47
USP41Q3LFD5 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
USP41Q3LFD5 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC17.98■□□□□ 0.47
USP41Q3LFD5 FAM58DP-201ENST00000428076 619 ntBASIC17.98■□□□□ 0.47
USP41Q3LFD5 SPCS2P4-201ENST00000436160 681 ntBASIC17.98■□□□□ 0.47
USP41Q3LFD5 ITGA9-AS1-209ENST00000450990 562 ntTSL 4 BASIC17.98■□□□□ 0.47
USP41Q3LFD5 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
USP41Q3LFD5 VASH2-211ENST00000517399 1068 ntAPPRIS ALT1 TSL 1 (best) BASIC17.98■□□□□ 0.47
USP41Q3LFD5 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC17.98■□□□□ 0.47
USP41Q3LFD5 PTHLH-207ENST00000539239 890 ntAPPRIS ALT1 TSL 5 BASIC17.98■□□□□ 0.47
USP41Q3LFD5 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
USP41Q3LFD5 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC17.98■□□□□ 0.47
USP41Q3LFD5 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC17.98■□□□□ 0.47
USP41Q3LFD5 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
USP41Q3LFD5 Z92544.3-201ENST00000624747 417 ntBASIC17.98■□□□□ 0.47
USP41Q3LFD5 AP001350.2-201ENST00000625104 1094 ntBASIC17.98■□□□□ 0.47
USP41Q3LFD5 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
USP41Q3LFD5 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC17.98■□□□□ 0.47
USP41Q3LFD5 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
USP41Q3LFD5 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC17.98■□□□□ 0.47
USP41Q3LFD5 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
USP41Q3LFD5 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
USP41Q3LFD5 LMTK2-201ENST00000297293 8946 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
USP41Q3LFD5 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
USP41Q3LFD5 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
USP41Q3LFD5 PUDP-203ENST00000424830 1334 ntTSL 3 BASIC17.98■□□□□ 0.47
USP41Q3LFD5 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
USP41Q3LFD5 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
USP41Q3LFD5 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC17.97■□□□□ 0.47
USP41Q3LFD5 TPR-209ENST00000613151 2478 ntTSL 5 BASIC17.97■□□□□ 0.47
USP41Q3LFD5 AC090340.1-201ENST00000620778 4980 ntBASIC17.97■□□□□ 0.47
USP41Q3LFD5 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
USP41Q3LFD5 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC17.97■□□□□ 0.47
USP41Q3LFD5 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
USP41Q3LFD5 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC17.97■□□□□ 0.47
USP41Q3LFD5 CAMKV-204ENST00000466940 1475 ntTSL 2 BASIC17.97■□□□□ 0.47
USP41Q3LFD5 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
USP41Q3LFD5 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC17.97■□□□□ 0.47
USP41Q3LFD5 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
USP41Q3LFD5 SIVA1-202ENST00000347067 550 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
USP41Q3LFD5 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC17.97■□□□□ 0.47
USP41Q3LFD5 RPL30-202ENST00000396070 440 ntTSL 2 BASIC17.97■□□□□ 0.47
USP41Q3LFD5 CNN2P2-201ENST00000443536 909 ntBASIC17.97■□□□□ 0.47
USP41Q3LFD5 CNN2P3-201ENST00000450201 906 ntBASIC17.97■□□□□ 0.47
USP41Q3LFD5 OST4-203ENST00000456793 561 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
USP41Q3LFD5 AL512356.2-201ENST00000546955 174 ntBASIC17.97■□□□□ 0.47
USP41Q3LFD5 VPS29-207ENST00000549970 818 ntTSL 3 BASIC17.97■□□□□ 0.47
USP41Q3LFD5 AC087641.1-201ENST00000557561 1021 ntBASIC17.97■□□□□ 0.47
USP41Q3LFD5 KRT8P23-201ENST00000560090 1207 ntBASIC17.97■□□□□ 0.47
USP41Q3LFD5 GNAO1-210ENST00000569295 930 ntTSL 2 BASIC17.97■□□□□ 0.47
USP41Q3LFD5 AL096865.1-201ENST00000606796 927 ntBASIC17.97■□□□□ 0.47
USP41Q3LFD5 AL136317.3-201ENST00000618497 906 ntBASIC17.97■□□□□ 0.47
USP41Q3LFD5 NNAT-201ENST00000062104 1297 ntAPPRIS P4 TSL 1 (best) BASIC17.97■□□□□ 0.47
USP41Q3LFD5 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC17.97■□□□□ 0.47
USP41Q3LFD5 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
USP41Q3LFD5 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
USP41Q3LFD5 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC17.97■□□□□ 0.47
USP41Q3LFD5 MYZAP-201ENST00000267853 2361 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
USP41Q3LFD5 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC17.97■□□□□ 0.47
USP41Q3LFD5 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC17.97■□□□□ 0.47
USP41Q3LFD5 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
USP41Q3LFD5 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
USP41Q3LFD5 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
USP41Q3LFD5 SLC22A20-204ENST00000530038 1673 ntBASIC17.96■□□□□ 0.47
USP41Q3LFD5 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
USP41Q3LFD5 FOS-208ENST00000555686 1496 ntTSL 2 BASIC17.96■□□□□ 0.47
USP41Q3LFD5 GDF7-201ENST00000272224 9749 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
USP41Q3LFD5 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC17.96■□□□□ 0.47
USP41Q3LFD5 UBL3-201ENST00000380680 4384 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
USP41Q3LFD5 DCP1B-201ENST00000280665 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
USP41Q3LFD5 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC17.96■□□□□ 0.47
USP41Q3LFD5 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
USP41Q3LFD5 RNU1-129P-201ENST00000384064 167 ntBASIC17.96■□□□□ 0.47
USP41Q3LFD5 SLC25A1P3-201ENST00000395415 828 ntBASIC17.96■□□□□ 0.47
USP41Q3LFD5 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC17.96■□□□□ 0.47
USP41Q3LFD5 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC17.96■□□□□ 0.47
USP41Q3LFD5 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC17.96■□□□□ 0.47
USP41Q3LFD5 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC17.96■□□□□ 0.47
USP41Q3LFD5 U1.21-201ENST00000580816 167 ntBASIC17.96■□□□□ 0.47
USP41Q3LFD5 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
USP41Q3LFD5 AL031055.1-201ENST00000606362 631 ntBASIC17.96■□□□□ 0.47
USP41Q3LFD5 AP001059.3-201ENST00000619053 235 ntBASIC17.96■□□□□ 0.47
USP41Q3LFD5 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC17.96■□□□□ 0.47
USP41Q3LFD5 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
USP41Q3LFD5 LTBP1-203ENST00000404816 6333 ntAPPRIS P4 TSL 5 BASIC17.96■□□□□ 0.47
USP41Q3LFD5 SORCS3-202ENST00000369701 5757 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 68 ms