Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
ABCA4P78363 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC14.57□□□□□ -0.08
ABCA4P78363 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
ABCA4P78363 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
ABCA4P78363 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC14.57□□□□□ -0.08
ABCA4P78363 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
ABCA4P78363 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
ABCA4P78363 RALGDS-205ENST00000393160 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
ABCA4P78363 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC14.57□□□□□ -0.08
ABCA4P78363 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC14.57□□□□□ -0.08
ABCA4P78363 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
ABCA4P78363 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC14.57□□□□□ -0.08
ABCA4P78363 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
ABCA4P78363 ABCB10-201ENST00000344517 3857 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
ABCA4P78363 FAM159B-201ENST00000389074 847 ntAPPRIS P1 TSL 2 BASIC14.57□□□□□ -0.08
ABCA4P78363 AL355306.1-201ENST00000415580 579 ntBASIC14.57□□□□□ -0.08
ABCA4P78363 AL807752.4-201ENST00000439076 580 ntTSL 2 BASIC14.57□□□□□ -0.08
ABCA4P78363 COX5A-203ENST00000564811 568 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
ABCA4P78363 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC14.57□□□□□ -0.08
ABCA4P78363 AC098484.3-202ENST00000603943 1011 ntAPPRIS P5 TSL 5 BASIC14.57□□□□□ -0.08
ABCA4P78363 GNA13-201ENST00000439174 4922 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
ABCA4P78363 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC14.57□□□□□ -0.08
ABCA4P78363 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
ABCA4P78363 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC14.57□□□□□ -0.08
ABCA4P78363 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC14.57□□□□□ -0.08
ABCA4P78363 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
ABCA4P78363 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
ABCA4P78363 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC14.57□□□□□ -0.08
ABCA4P78363 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC14.57□□□□□ -0.08
ABCA4P78363 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC14.57□□□□□ -0.08
ABCA4P78363 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
ABCA4P78363 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC14.57□□□□□ -0.08
ABCA4P78363 CD1B-201ENST00000368168 1395 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
ABCA4P78363 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
ABCA4P78363 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
ABCA4P78363 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
ABCA4P78363 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
ABCA4P78363 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
ABCA4P78363 SLC9A7-201ENST00000328306 3838 ntAPPRIS P3 TSL 1 (best) BASIC14.57□□□□□ -0.08
ABCA4P78363 CKS1B-202ENST00000368436 820 ntTSL 2 BASIC14.57□□□□□ -0.08
ABCA4P78363 LRRC37A5P-201ENST00000374304 1103 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
ABCA4P78363 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC14.57□□□□□ -0.08
ABCA4P78363 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
ABCA4P78363 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC14.57□□□□□ -0.08
ABCA4P78363 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
ABCA4P78363 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC14.57□□□□□ -0.08
ABCA4P78363 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
ABCA4P78363 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC14.57□□□□□ -0.08
ABCA4P78363 AP5B1-201ENST00000532090 4811 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
ABCA4P78363 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC14.57□□□□□ -0.08
ABCA4P78363 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC14.57□□□□□ -0.08
ABCA4P78363 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
ABCA4P78363 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC14.56□□□□□ -0.08
ABCA4P78363 BCR-201ENST00000305877 7082 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
ABCA4P78363 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC14.56□□□□□ -0.08
ABCA4P78363 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
ABCA4P78363 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC14.56□□□□□ -0.08
ABCA4P78363 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
ABCA4P78363 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC14.56□□□□□ -0.08
ABCA4P78363 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
ABCA4P78363 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
ABCA4P78363 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
ABCA4P78363 CTHRC1-201ENST00000330295 1271 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
ABCA4P78363 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC14.56□□□□□ -0.08
ABCA4P78363 C9orf24-204ENST00000379127 596 ntTSL 3 BASIC14.56□□□□□ -0.08
ABCA4P78363 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC14.56□□□□□ -0.08
ABCA4P78363 BASP1P1-201ENST00000430708 665 ntBASIC14.56□□□□□ -0.08
ABCA4P78363 TMEM176B-205ENST00000450753 1006 ntTSL 2 BASIC14.56□□□□□ -0.08
ABCA4P78363 MTFR1L-218ENST00000526894 733 ntTSL 4 BASIC14.56□□□□□ -0.08
ABCA4P78363 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
ABCA4P78363 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
ABCA4P78363 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC14.56□□□□□ -0.08
ABCA4P78363 AC079328.2-201ENST00000561241 3354 ntBASIC14.56□□□□□ -0.08
ABCA4P78363 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
ABCA4P78363 AC135050.7-201ENST00000624508 2218 ntBASIC14.56□□□□□ -0.08
ABCA4P78363 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC14.56□□□□□ -0.08
ABCA4P78363 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC14.56□□□□□ -0.08
ABCA4P78363 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC14.56□□□□□ -0.08
ABCA4P78363 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
ABCA4P78363 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC14.56□□□□□ -0.08
ABCA4P78363 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
ABCA4P78363 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
ABCA4P78363 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC14.56□□□□□ -0.08
ABCA4P78363 ZNFX1-203ENST00000371754 5235 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
ABCA4P78363 RPL21-203ENST00000319826 806 ntAPPRIS P1 TSL 2 BASIC14.55□□□□□ -0.08
ABCA4P78363 BAD-202ENST00000394531 631 ntTSL 3 BASIC14.55□□□□□ -0.08
ABCA4P78363 H2AFV-207ENST00000446531 1041 ntTSL 2 BASIC14.55□□□□□ -0.08
ABCA4P78363 SLC25A30-AS1-201ENST00000506633 701 ntTSL 3 BASIC14.55□□□□□ -0.08
ABCA4P78363 EEF1E1-205ENST00000507463 654 ntTSL 2 BASIC14.55□□□□□ -0.08
ABCA4P78363 AC097493.3-201ENST00000509725 367 ntBASIC14.55□□□□□ -0.08
ABCA4P78363 GALNT9-208ENST00000541995 1001 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
ABCA4P78363 BAD-207ENST00000544785 525 ntTSL 3 BASIC14.55□□□□□ -0.08
ABCA4P78363 ZNF710-AS1-201ENST00000558334 1168 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
ABCA4P78363 SRP9-204ENST00000619790 377 ntTSL 2 BASIC14.55□□□□□ -0.08
ABCA4P78363 HFE2-206ENST00000634927 506 ntTSL 4 BASIC14.55□□□□□ -0.08
ABCA4P78363 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
ABCA4P78363 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC14.55□□□□□ -0.08
ABCA4P78363 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
ABCA4P78363 GATB-209ENST00000512306 1519 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
ABCA4P78363 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 34.9 ms