Protein–RNA interactions for Protein: P48742

LHX1, LIM/homeobox protein Lhx1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX1P48742 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
LHX1P48742 LINC01413-201ENST00000564843 772 ntTSL 3 BASIC17.92■□□□□ 0.46
LHX1P48742 AC009630.3-201ENST00000581909 729 ntTSL 5 BASIC17.92■□□□□ 0.46
LHX1P48742 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC17.92■□□□□ 0.46
LHX1P48742 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC17.92■□□□□ 0.46
LHX1P48742 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
LHX1P48742 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC17.92■□□□□ 0.46
LHX1P48742 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
LHX1P48742 EDC3-202ENST00000426797 2093 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
LHX1P48742 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
LHX1P48742 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
LHX1P48742 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
LHX1P48742 DAPK1-207ENST00000469640 5899 ntTSL 5 BASIC17.92■□□□□ 0.46
LHX1P48742 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
LHX1P48742 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC17.92■□□□□ 0.46
LHX1P48742 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
LHX1P48742 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC17.92■□□□□ 0.46
LHX1P48742 CAMK2D-201ENST00000296402 5820 ntAPPRIS P3 TSL 5 BASIC17.92■□□□□ 0.46
LHX1P48742 PCGF3-201ENST00000362003 5685 ntAPPRIS P1 TSL 5 BASIC17.92■□□□□ 0.46
LHX1P48742 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
LHX1P48742 KLHL31-201ENST00000370905 5743 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
LHX1P48742 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC17.91■□□□□ 0.46
LHX1P48742 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
LHX1P48742 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
LHX1P48742 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
LHX1P48742 TPST2-201ENST00000338754 5697 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
LHX1P48742 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
LHX1P48742 COQ10A-202ENST00000433805 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
LHX1P48742 RRAGD-202ENST00000369415 4900 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
LHX1P48742 BRPF1-203ENST00000424362 4712 ntAPPRIS ALT1 TSL 1 (best) BASIC17.91■□□□□ 0.46
LHX1P48742 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
LHX1P48742 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC17.91■□□□□ 0.46
LHX1P48742 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
LHX1P48742 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC17.91■□□□□ 0.46
LHX1P48742 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC17.91■□□□□ 0.46
LHX1P48742 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC17.91■□□□□ 0.46
LHX1P48742 BAX-203ENST00000354470 433 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
LHX1P48742 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
LHX1P48742 AC005281.1-201ENST00000433040 911 ntTSL 5 BASIC17.91■□□□□ 0.46
LHX1P48742 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
LHX1P48742 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
LHX1P48742 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC17.91■□□□□ 0.46
LHX1P48742 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC17.91■□□□□ 0.46
LHX1P48742 FXYD1-208ENST00000589209 428 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
LHX1P48742 FXYD1-211ENST00000612146 690 ntAPPRIS P1 TSL 3 BASIC17.91■□□□□ 0.46
LHX1P48742 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
LHX1P48742 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC17.91■□□□□ 0.46
LHX1P48742 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
LHX1P48742 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
LHX1P48742 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC17.91■□□□□ 0.46
LHX1P48742 UBFD1-201ENST00000395878 5110 ntAPPRIS P2 TSL 2 BASIC17.91■□□□□ 0.46
LHX1P48742 RAB7A-203ENST00000482525 1589 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
LHX1P48742 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC17.91■□□□□ 0.46
LHX1P48742 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC17.91■□□□□ 0.46
LHX1P48742 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
LHX1P48742 KLK5-203ENST00000593428 1365 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
LHX1P48742 UNC119-204ENST00000470125 2050 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
LHX1P48742 ZNF470-201ENST00000330619 7151 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
LHX1P48742 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC17.9■□□□□ 0.46
LHX1P48742 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
LHX1P48742 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC17.9■□□□□ 0.46
LHX1P48742 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC17.9■□□□□ 0.46
LHX1P48742 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
LHX1P48742 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
LHX1P48742 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
LHX1P48742 SSB-202ENST00000409333 1782 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
LHX1P48742 PMS2P4-201ENST00000412466 1052 ntBASIC17.9■□□□□ 0.46
LHX1P48742 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
LHX1P48742 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC17.9■□□□□ 0.46
LHX1P48742 CFL1-202ENST00000524553 860 ntTSL 2 BASIC17.9■□□□□ 0.46
LHX1P48742 AP002490.2-201ENST00000524791 560 ntBASIC17.9■□□□□ 0.46
LHX1P48742 AC109635.5-201ENST00000533593 962 ntBASIC17.9■□□□□ 0.46
LHX1P48742 CCND1-203ENST00000536559 553 ntTSL 3 BASIC17.9■□□□□ 0.46
LHX1P48742 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC17.9■□□□□ 0.46
LHX1P48742 CD7-202ENST00000578509 925 ntTSL 3 BASIC17.9■□□□□ 0.46
LHX1P48742 MIR3909-201ENST00000579518 119 ntBASIC17.9■□□□□ 0.46
LHX1P48742 CYP2A7P1-201ENST00000595391 815 ntBASIC17.9■□□□□ 0.46
LHX1P48742 AL009183.1-201ENST00000603760 355 ntBASIC17.9■□□□□ 0.46
LHX1P48742 AC013467.2-201ENST00000605472 835 ntBASIC17.9■□□□□ 0.46
LHX1P48742 AL161645.1-201ENST00000622716 1255 ntBASIC17.9■□□□□ 0.46
LHX1P48742 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
LHX1P48742 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC17.9■□□□□ 0.46
LHX1P48742 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
LHX1P48742 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
LHX1P48742 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
LHX1P48742 SIRT6-214ENST00000601488 1361 ntTSL 3 BASIC17.9■□□□□ 0.46
LHX1P48742 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
LHX1P48742 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
LHX1P48742 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC17.9■□□□□ 0.46
LHX1P48742 AGFG1-201ENST00000310078 8668 ntAPPRIS P3 TSL 1 (best) BASIC17.89■□□□□ 0.46
LHX1P48742 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
LHX1P48742 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC17.89■□□□□ 0.45
LHX1P48742 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC17.89■□□□□ 0.45
LHX1P48742 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
LHX1P48742 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC17.89■□□□□ 0.45
LHX1P48742 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC17.89■□□□□ 0.45
LHX1P48742 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
LHX1P48742 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC17.89■□□□□ 0.45
LHX1P48742 LINC01168-201ENST00000461291 5254 ntTSL 2 BASIC17.89■□□□□ 0.45
LHX1P48742 LETM1P2-201ENST00000597330 2178 ntBASIC17.89■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 26.6 ms