Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC16.75■□□□□ 0.27
CXCL12P48061 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC16.75■□□□□ 0.27
CXCL12P48061 AL021920.2-201ENST00000624828 1351 ntBASIC16.75■□□□□ 0.27
CXCL12P48061 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CXCL12P48061 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC16.75■□□□□ 0.27
CXCL12P48061 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC16.75■□□□□ 0.27
CXCL12P48061 LINC00896-202ENST00000609602 2128 ntBASIC16.75■□□□□ 0.27
CXCL12P48061 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC16.75■□□□□ 0.27
CXCL12P48061 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
CXCL12P48061 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
CXCL12P48061 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
CXCL12P48061 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
CXCL12P48061 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
CXCL12P48061 SLC25A24-204ENST00000569674 2357 ntBASIC16.74■□□□□ 0.27
CXCL12P48061 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
CXCL12P48061 ATP6V0E2-202ENST00000425642 1649 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
CXCL12P48061 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
CXCL12P48061 UNKL-204ENST00000389221 5116 ntAPPRIS ALT2 TSL 5 BASIC16.74■□□□□ 0.27
CXCL12P48061 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC16.74■□□□□ 0.27
CXCL12P48061 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
CXCL12P48061 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC16.74■□□□□ 0.27
CXCL12P48061 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC16.74■□□□□ 0.27
CXCL12P48061 BMPER-201ENST00000297161 5031 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
CXCL12P48061 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC16.74■□□□□ 0.27
CXCL12P48061 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
CXCL12P48061 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC16.74■□□□□ 0.27
CXCL12P48061 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC16.74■□□□□ 0.27
CXCL12P48061 HCST-201ENST00000246551 613 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
CXCL12P48061 ACTA1-201ENST00000366683 1122 ntTSL 5 BASIC16.74■□□□□ 0.27
CXCL12P48061 AP1S3-202ENST00000396653 589 ntTSL 4 BASIC16.74■□□□□ 0.27
CXCL12P48061 DGCR5-201ENST00000399539 862 ntBASIC16.74■□□□□ 0.27
CXCL12P48061 RPL37AP1-201ENST00000412502 279 ntBASIC16.74■□□□□ 0.27
CXCL12P48061 AC093151.3-201ENST00000425554 623 ntTSL 2 BASIC16.74■□□□□ 0.27
CXCL12P48061 TMEM247-204ENST00000434431 680 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
CXCL12P48061 MACROD2-AS1-201ENST00000439451 1230 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
CXCL12P48061 TGFA-205ENST00000444975 985 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
CXCL12P48061 INE1-201ENST00000456273 945 ntBASIC16.74■□□□□ 0.27
CXCL12P48061 NECAP2-203ENST00000457722 935 ntTSL 2 BASIC16.74■□□□□ 0.27
CXCL12P48061 RN7SL752P-201ENST00000463779 287 ntBASIC16.74■□□□□ 0.27
CXCL12P48061 DRAP1-208ENST00000532933 751 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
CXCL12P48061 BCL2L12-206ENST00000598306 510 ntTSL 5 BASIC16.74■□□□□ 0.27
CXCL12P48061 AC026803.2-201ENST00000599784 819 ntTSL 3 BASIC16.74■□□□□ 0.27
CXCL12P48061 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC16.74■□□□□ 0.27
CXCL12P48061 BCRP2-201ENST00000398241 1842 ntTSL 2 BASIC16.74■□□□□ 0.27
CXCL12P48061 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
CXCL12P48061 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC16.74■□□□□ 0.27
CXCL12P48061 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
CXCL12P48061 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC16.74■□□□□ 0.27
CXCL12P48061 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
CXCL12P48061 IL11RA-215ENST00000602473 1388 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
CXCL12P48061 C2orf81-202ENST00000612891 1902 ntAPPRIS ALT2 TSL 5 BASIC16.74■□□□□ 0.27
CXCL12P48061 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
CXCL12P48061 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
CXCL12P48061 AC098591.1-201ENST00000381811 1613 ntTSL 2 BASIC16.74■□□□□ 0.27
CXCL12P48061 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC16.74■□□□□ 0.27
CXCL12P48061 ZFP1-209ENST00000570010 1457 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
CXCL12P48061 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC16.73■□□□□ 0.27
CXCL12P48061 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
CXCL12P48061 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC16.73■□□□□ 0.27
CXCL12P48061 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC16.73■□□□□ 0.27
CXCL12P48061 ANKS1A-201ENST00000360359 6347 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CXCL12P48061 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
CXCL12P48061 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
CXCL12P48061 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC16.73■□□□□ 0.27
CXCL12P48061 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CXCL12P48061 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
CXCL12P48061 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CXCL12P48061 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
CXCL12P48061 YAP1-209ENST00000537274 5350 ntAPPRIS ALT2 TSL 5 BASIC16.73■□□□□ 0.27
CXCL12P48061 SS18L2-201ENST00000011691 781 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CXCL12P48061 GPR148-201ENST00000309926 1267 ntAPPRIS P1 BASIC16.73■□□□□ 0.27
CXCL12P48061 YBEY-202ENST00000339195 890 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
CXCL12P48061 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC16.73■□□□□ 0.27
CXCL12P48061 MRNIP-202ENST00000376931 1004 ntAPPRIS ALT2 TSL 2 BASIC16.73■□□□□ 0.27
CXCL12P48061 YBEY-203ENST00000397691 764 ntAPPRIS P1 TSL 3 BASIC16.73■□□□□ 0.27
CXCL12P48061 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC16.73■□□□□ 0.27
CXCL12P48061 ARL6IP4-207ENST00000426960 910 ntAPPRIS ALT2 TSL 3 BASIC16.73■□□□□ 0.27
CXCL12P48061 DFFBP1-201ENST00000433250 979 ntBASIC16.73■□□□□ 0.27
CXCL12P48061 AC011495.1-201ENST00000498085 584 ntBASIC16.73■□□□□ 0.27
CXCL12P48061 TMEM161B-AS1-212ENST00000513011 833 ntTSL 3 BASIC16.73■□□□□ 0.27
CXCL12P48061 CLNS1A-210ENST00000528364 953 ntAPPRIS P1 TSL 3 BASIC16.73■□□□□ 0.27
CXCL12P48061 AC135586.1-201ENST00000539323 574 ntBASIC16.73■□□□□ 0.27
CXCL12P48061 YEATS4-202ENST00000548020 1100 ntTSL 2 BASIC16.73■□□□□ 0.27
CXCL12P48061 AC010336.2-201ENST00000564226 506 ntBASIC16.73■□□□□ 0.27
CXCL12P48061 AC040162.1-202ENST00000573493 573 ntAPPRIS P1 TSL 3 BASIC16.73■□□□□ 0.27
CXCL12P48061 ACY1-212ENST00000635797 1294 ntTSL 5 BASIC16.73■□□□□ 0.27
CXCL12P48061 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC16.73■□□□□ 0.27
CXCL12P48061 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC16.73■□□□□ 0.27
CXCL12P48061 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC16.73■□□□□ 0.27
CXCL12P48061 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CXCL12P48061 AL391825.1-201ENST00000457671 1364 ntBASIC16.73■□□□□ 0.27
CXCL12P48061 LINC00895-201ENST00000629028 1637 ntBASIC16.73■□□□□ 0.27
CXCL12P48061 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC16.73■□□□□ 0.27
CXCL12P48061 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC16.73■□□□□ 0.27
CXCL12P48061 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC16.73■□□□□ 0.27
CXCL12P48061 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CXCL12P48061 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CXCL12P48061 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
CXCL12P48061 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CXCL12P48061 KRT8P49-201ENST00000604166 1432 ntBASIC16.72■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 28.7 ms