Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 AL606760.2-202ENST00000452466 524 ntTSL 5 BASIC18.56■□□□□ 0.56
COL6A1P12109 MACROD2-AS1-202ENST00000455291 663 ntTSL 2 BASIC18.56■□□□□ 0.56
COL6A1P12109 KRBOX4-207ENST00000487081 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
COL6A1P12109 AC135586.1-201ENST00000539323 574 ntBASIC18.56■□□□□ 0.56
COL6A1P12109 MRPL52-216ENST00000557221 922 ntTSL 2 BASIC18.56■□□□□ 0.56
COL6A1P12109 WASH4P-201ENST00000564273 1246 ntBASIC18.56■□□□□ 0.56
COL6A1P12109 FAM192A-212ENST00000566077 1066 ntTSL 3 BASIC18.56■□□□□ 0.56
COL6A1P12109 AC004790.1-201ENST00000612686 536 ntBASIC18.56■□□□□ 0.56
COL6A1P12109 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
COL6A1P12109 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC18.56■□□□□ 0.56
COL6A1P12109 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
COL6A1P12109 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
COL6A1P12109 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
COL6A1P12109 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
COL6A1P12109 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC18.56■□□□□ 0.56
COL6A1P12109 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC18.56■□□□□ 0.56
COL6A1P12109 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC18.56■□□□□ 0.56
COL6A1P12109 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
COL6A1P12109 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
COL6A1P12109 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC18.56■□□□□ 0.56
COL6A1P12109 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
COL6A1P12109 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC18.56■□□□□ 0.56
COL6A1P12109 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC18.56■□□□□ 0.56
COL6A1P12109 BCL2L12-203ENST00000441864 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
COL6A1P12109 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC18.55■□□□□ 0.56
COL6A1P12109 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC18.55■□□□□ 0.56
COL6A1P12109 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
COL6A1P12109 MAPT-215ENST00000574436 1326 ntAPPRIS ALT2 TSL 5 BASIC18.55■□□□□ 0.56
COL6A1P12109 ADM5-201ENST00000420022 1718 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
COL6A1P12109 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC18.55■□□□□ 0.56
COL6A1P12109 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC18.55■□□□□ 0.56
COL6A1P12109 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC18.55■□□□□ 0.56
COL6A1P12109 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC18.55■□□□□ 0.56
COL6A1P12109 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
COL6A1P12109 RHOC-206ENST00000369637 888 ntAPPRIS P1 TSL 3 BASIC18.55■□□□□ 0.56
COL6A1P12109 ZDHHC12-201ENST00000372663 1129 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
COL6A1P12109 WDR38-201ENST00000373574 1252 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
COL6A1P12109 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC18.55■□□□□ 0.56
COL6A1P12109 CALML4-206ENST00000467889 987 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
COL6A1P12109 AC026803.2-201ENST00000599784 819 ntTSL 3 BASIC18.55■□□□□ 0.56
COL6A1P12109 AC008494.3-201ENST00000606615 944 ntBASIC18.55■□□□□ 0.56
COL6A1P12109 RN7SL828P-201ENST00000607615 303 ntBASIC18.55■□□□□ 0.56
COL6A1P12109 AL589739.1-201ENST00000607720 493 ntBASIC18.55■□□□□ 0.56
COL6A1P12109 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC18.55■□□□□ 0.56
COL6A1P12109 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
COL6A1P12109 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
COL6A1P12109 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC18.55■□□□□ 0.56
COL6A1P12109 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.56
COL6A1P12109 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
COL6A1P12109 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC18.54■□□□□ 0.56
COL6A1P12109 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
COL6A1P12109 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
COL6A1P12109 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC18.54■□□□□ 0.56
COL6A1P12109 AC004408.2-201ENST00000623613 2777 ntBASIC18.54■□□□□ 0.56
COL6A1P12109 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC18.54■□□□□ 0.56
COL6A1P12109 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC18.54■□□□□ 0.56
COL6A1P12109 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC18.54■□□□□ 0.56
COL6A1P12109 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC18.54■□□□□ 0.56
COL6A1P12109 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
COL6A1P12109 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
COL6A1P12109 ESR2-206ENST00000553796 1634 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
COL6A1P12109 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC18.54■□□□□ 0.56
COL6A1P12109 CIDEA-201ENST00000320477 828 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
COL6A1P12109 RBM3-202ENST00000376755 1130 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
COL6A1P12109 CIB3-202ENST00000379859 467 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
COL6A1P12109 CENPM-206ENST00000407253 818 ntTSL 2 BASIC18.54■□□□□ 0.56
COL6A1P12109 AL353705.2-201ENST00000428243 662 ntBASIC18.54■□□□□ 0.56
COL6A1P12109 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC18.54■□□□□ 0.56
COL6A1P12109 BANF1P1-201ENST00000553684 263 ntBASIC18.54■□□□□ 0.56
COL6A1P12109 AL161757.4-201ENST00000554149 621 ntTSL 3 BASIC18.54■□□□□ 0.56
COL6A1P12109 AC105339.1-202ENST00000559535 1283 ntTSL 5 BASIC18.54■□□□□ 0.56
COL6A1P12109 AC022167.4-201ENST00000570290 498 ntTSL 3 BASIC18.54■□□□□ 0.56
COL6A1P12109 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC18.54■□□□□ 0.56
COL6A1P12109 SNX12-206ENST00000622259 661 ntTSL 5 BASIC18.54■□□□□ 0.56
COL6A1P12109 AP001350.2-201ENST00000625104 1094 ntBASIC18.54■□□□□ 0.56
COL6A1P12109 AL033527.4-201ENST00000641026 673 ntBASIC18.54■□□□□ 0.56
COL6A1P12109 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC18.54■□□□□ 0.56
COL6A1P12109 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC18.54■□□□□ 0.56
COL6A1P12109 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
COL6A1P12109 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
COL6A1P12109 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC18.54■□□□□ 0.56
COL6A1P12109 TEKT4P2-201ENST00000416067 1599 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
COL6A1P12109 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC18.54■□□□□ 0.56
COL6A1P12109 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
COL6A1P12109 ELOA3-201ENST00000330682 1877 ntAPPRIS P1 BASIC18.54■□□□□ 0.56
COL6A1P12109 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
COL6A1P12109 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC18.54■□□□□ 0.56
COL6A1P12109 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC18.53■□□□□ 0.56
COL6A1P12109 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
COL6A1P12109 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC18.53■□□□□ 0.56
COL6A1P12109 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC18.53■□□□□ 0.56
COL6A1P12109 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
COL6A1P12109 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC18.53■□□□□ 0.56
COL6A1P12109 LINC00895-201ENST00000629028 1637 ntBASIC18.53■□□□□ 0.56
COL6A1P12109 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC18.53■□□□□ 0.56
COL6A1P12109 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
COL6A1P12109 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
COL6A1P12109 CMA1-201ENST00000206446 633 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
COL6A1P12109 UBE2G2-201ENST00000330942 721 ntTSL 3 BASIC18.53■□□□□ 0.56
COL6A1P12109 LCE1A-201ENST00000335123 422 ntAPPRIS P1 BASIC18.53■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 33.4 ms