Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC20.02■□□□□ 0.79
HMGB1P09429 TTC24-201ENST00000368236 2005 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.79
HMGB1P09429 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC20.02■□□□□ 0.79
HMGB1P09429 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
HMGB1P09429 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC20.02■□□□□ 0.79
HMGB1P09429 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC20.01■□□□□ 0.79
HMGB1P09429 MAP4K1-201ENST00000396857 2653 ntAPPRIS P1 TSL 5 BASIC20.01■□□□□ 0.79
HMGB1P09429 CHST8-201ENST00000262622 2479 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
HMGB1P09429 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
HMGB1P09429 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC20.01■□□□□ 0.79
HMGB1P09429 AL603756.1-201ENST00000606511 2163 ntBASIC20.01■□□□□ 0.79
HMGB1P09429 TAB1-202ENST00000331454 1660 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
HMGB1P09429 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC20.01■□□□□ 0.79
HMGB1P09429 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC20.01■□□□□ 0.79
HMGB1P09429 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC20.01■□□□□ 0.79
HMGB1P09429 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
HMGB1P09429 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC20.01■□□□□ 0.79
HMGB1P09429 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
HMGB1P09429 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
HMGB1P09429 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC20.01■□□□□ 0.79
HMGB1P09429 MAPKAP1-208ENST00000394063 2977 ntTSL 5 BASIC20.01■□□□□ 0.79
HMGB1P09429 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC20.01■□□□□ 0.79
HMGB1P09429 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC20.01■□□□□ 0.79
HMGB1P09429 SLC25A6P2-201ENST00000497974 877 ntBASIC20.01■□□□□ 0.79
HMGB1P09429 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC20.01■□□□□ 0.79
HMGB1P09429 AC005593.1-201ENST00000624894 515 ntBASIC20.01■□□□□ 0.79
HMGB1P09429 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
HMGB1P09429 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC20.01■□□□□ 0.79
HMGB1P09429 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC20.01■□□□□ 0.79
HMGB1P09429 TTC8-216ENST00000614125 2377 ntTSL 5 BASIC20.01■□□□□ 0.79
HMGB1P09429 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
HMGB1P09429 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
HMGB1P09429 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
HMGB1P09429 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC20.01■□□□□ 0.79
HMGB1P09429 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
HMGB1P09429 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
HMGB1P09429 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
HMGB1P09429 AC129492.6-201ENST00000611383 1305 ntBASIC20.01■□□□□ 0.79
HMGB1P09429 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC20.01■□□□□ 0.79
HMGB1P09429 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC20■□□□□ 0.79
HMGB1P09429 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC20■□□□□ 0.79
HMGB1P09429 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
HMGB1P09429 PC-204ENST00000524491 1714 ntTSL 2 BASIC20■□□□□ 0.79
HMGB1P09429 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
HMGB1P09429 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
HMGB1P09429 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC20■□□□□ 0.79
HMGB1P09429 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC20■□□□□ 0.79
HMGB1P09429 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC20■□□□□ 0.79
HMGB1P09429 MOK-208ENST00000519058 917 ntTSL 2 BASIC20■□□□□ 0.79
HMGB1P09429 AP002469.2-201ENST00000531724 424 ntBASIC20■□□□□ 0.79
HMGB1P09429 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC20■□□□□ 0.79
HMGB1P09429 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC20■□□□□ 0.79
HMGB1P09429 AC091167.2-201ENST00000579581 588 ntBASIC20■□□□□ 0.79
HMGB1P09429 AL773604.1-201ENST00000617417 272 ntBASIC20■□□□□ 0.79
HMGB1P09429 AC148477.8-201ENST00000624298 468 ntBASIC20■□□□□ 0.79
HMGB1P09429 FAM215A-202ENST00000632077 792 ntBASIC20■□□□□ 0.79
HMGB1P09429 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC20■□□□□ 0.79
HMGB1P09429 AMT-206ENST00000458307 1860 ntTSL 2 BASIC20■□□□□ 0.79
HMGB1P09429 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC20■□□□□ 0.79
HMGB1P09429 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC20■□□□□ 0.79
HMGB1P09429 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
HMGB1P09429 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC20■□□□□ 0.79
HMGB1P09429 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
HMGB1P09429 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
HMGB1P09429 ADGRG2-209ENST00000379876 4779 ntTSL 1 (best) BASIC20■□□□□ 0.79
HMGB1P09429 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC20■□□□□ 0.79
HMGB1P09429 DGKE-204ENST00000572810 1843 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
HMGB1P09429 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
HMGB1P09429 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
HMGB1P09429 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC19.99■□□□□ 0.79
HMGB1P09429 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC19.99■□□□□ 0.79
HMGB1P09429 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
HMGB1P09429 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC19.99■□□□□ 0.79
HMGB1P09429 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC19.99■□□□□ 0.79
HMGB1P09429 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
HMGB1P09429 ASXL1-202ENST00000375687 7031 ntAPPRIS P2 TSL 5 BASIC19.99■□□□□ 0.79
HMGB1P09429 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
HMGB1P09429 PTP4A1-201ENST00000370651 5088 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
HMGB1P09429 EPB41L3-207ENST00000545076 3190 ntAPPRIS ALT2 TSL 2 BASIC19.99■□□□□ 0.79
HMGB1P09429 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC19.99■□□□□ 0.79
HMGB1P09429 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC19.99■□□□□ 0.79
HMGB1P09429 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC19.99■□□□□ 0.79
HMGB1P09429 PP7080-204ENST00000510714 601 ntTSL 3 BASIC19.99■□□□□ 0.79
HMGB1P09429 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC19.99■□□□□ 0.79
HMGB1P09429 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC19.99■□□□□ 0.79
HMGB1P09429 AC012640.2-201ENST00000561606 901 ntBASIC19.99■□□□□ 0.79
HMGB1P09429 MPDU1-223ENST00000582151 728 ntBASIC19.99■□□□□ 0.79
HMGB1P09429 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC19.99■□□□□ 0.79
HMGB1P09429 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC19.99■□□□□ 0.79
HMGB1P09429 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC19.99■□□□□ 0.79
HMGB1P09429 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC19.99■□□□□ 0.79
HMGB1P09429 OPRK1-205ENST00000612786 5196 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
HMGB1P09429 FCGBP-203ENST00000620799 4926 ntTSL 5 BASIC19.99■□□□□ 0.79
HMGB1P09429 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC19.99■□□□□ 0.79
HMGB1P09429 LINC00323-202ENST00000441268 2095 ntTSL 2 BASIC19.99■□□□□ 0.79
HMGB1P09429 CAMK2D-201ENST00000296402 5820 ntAPPRIS P3 TSL 5 BASIC19.99■□□□□ 0.79
HMGB1P09429 NRBP2-202ENST00000442628 3587 ntAPPRIS P1 TSL 2 BASIC19.99■□□□□ 0.79
HMGB1P09429 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC19.99■□□□□ 0.79
HMGB1P09429 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC19.99■□□□□ 0.79
HMGB1P09429 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC19.99■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 33 ms